Run ID: SRR5485562
Sample name:
Date: 18-08-2022 08:26:01
Number of reads: 157502
Percentage reads mapped: 99.18
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.95 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
embB | 4247429 | p.Met306Leu | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6746 | p.Gln503Lys | missense_variant | 0.15 |
gyrB | 6765 | p.Leu509Arg | missense_variant | 0.18 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7617 | p.Arg106Cys | missense_variant | 0.14 |
gyrA | 7628 | c.327G>A | synonymous_variant | 0.14 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.3 |
embB | 4247523 | p.Leu337Pro | missense_variant | 0.17 |