TB-Profiler result

Run: SRR5485568
Summary

Run ID: SRR5485568

Sample name:

Date: 18-08-2022 08:25:36

Number of reads: 110533

Percentage reads mapped: 99.26

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6632 p.Gly465Ser missense_variant 0.14
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.21
fabG1 1673373 c.-67G>A upstream_gene_variant 0.17
fabG1 1673376 c.-64G>A upstream_gene_variant 0.17
fabG1 1673400 c.-40C>T upstream_gene_variant 0.17
katG 2155097 p.Tyr339Asp missense_variant 0.2
katG 2155267 p.Asp282Ala missense_variant 0.18
katG 2155277 p.Gly279Cys missense_variant 0.18