TB-Profiler result

Run: SRR5485570
Summary

Run ID: SRR5485570

Sample name:

Date: 18-08-2022 08:25:30

Number of reads: 99114

Percentage reads mapped: 99.23

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761140 p.His445Pro missense_variant 0.96 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpsL 781661 p.Cys34Trp missense_variant 0.16
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.25
pncA 2288693 c.549T>G synonymous_variant 0.22
eis 2715365 c.-33A>C upstream_gene_variant 0.17
eis 2715367 c.-35G>T upstream_gene_variant 0.17
embB 4247616 p.Glu368Gly missense_variant 0.15