TB-Profiler result

Run: SRR5485575
Summary

Run ID: SRR5485575

Sample name:

Date: 18-08-2022 08:25:04

Number of reads: 84855

Percentage reads mapped: 98.84

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761101 p.Gln432Pro missense_variant 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6644 p.Ser469Arg missense_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.28
rrs 1472652 n.807A>C non_coding_transcript_exon_variant 0.3
rrs 1472718 n.873C>T non_coding_transcript_exon_variant 0.15
rrs 1472721 n.876C>T non_coding_transcript_exon_variant 0.15
embB 4247348 p.Thr279Pro missense_variant 0.21