Run ID: SRR5485576
Sample name:
Date: 18-08-2022 08:25:04
Number of reads: 117785
Percentage reads mapped: 99.41
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Asp | missense_variant | 0.93 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289039 | p.Trp68* | stop_gained | 0.22 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6757 | c.-545C>A | upstream_gene_variant | 0.2 |
rpoB | 761228 | p.Tyr474* | stop_gained | 0.15 |
rpsL | 781661 | p.Cys34Trp | missense_variant | 0.16 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473208 | n.1363G>A | non_coding_transcript_exon_variant | 0.31 |
katG | 2155076 | p.Ser346Gly | missense_variant | 0.18 |
pncA | 2289052 | p.Tyr64His | missense_variant | 0.13 |