TB-Profiler result

Run: SRR5485581
Summary

Run ID: SRR5485581

Sample name:

Date: 18-08-2022 08:24:41

Number of reads: 92588

Percentage reads mapped: 97.15

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472362 n.517C>T non_coding_transcript_exon_variant 1.0 streptomycin
embB 4247431 p.Met306Ile missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.23
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.46
rrs 1473241 n.1396C>T non_coding_transcript_exon_variant 0.15
rrs 1473243 n.1398G>A non_coding_transcript_exon_variant 0.15
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.14
pncA 2288916 p.Val109Gly missense_variant 0.19
pncA 2288924 p.Phe106Val missense_variant 0.18