Run ID: SRR5485587
Sample name:
Date: 18-08-2022 08:23:59
Number of reads: 97291
Percentage reads mapped: 98.95
Strain:
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
pncA | 2288821 | p.Gln141* | stop_gained | 0.17 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472301 | n.456C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472302 | n.457G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473467 | n.-191A>G | upstream_gene_variant | 0.18 |
embB | 4247824 | c.1311C>A | synonymous_variant | 0.17 |