TB-Profiler result

Run: SRR5485598
Summary

Run ID: SRR5485598

Sample name:

Date: 18-08-2022 08:23:15

Number of reads: 70329

Percentage reads mapped: 99.37

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
embB 4247431 p.Met306Ile missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761079 p.Phe425Leu missense_variant 0.18
rpsL 781661 p.Cys34Trp missense_variant 0.14
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.21
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.24
rrs 1473373 n.1528C>T non_coding_transcript_exon_variant 0.2
embB 4247348 p.Thr279Pro missense_variant 0.15
embB 4247352 p.Asp280Ala missense_variant 0.14