TB-Profiler result

Run: SRR5485602
Summary

Run ID: SRR5485602

Sample name:

Date: 18-08-2022 08:22:54

Number of reads: 102992

Percentage reads mapped: 97.53

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761059 p.Val418Gly missense_variant 0.2
rpsL 781661 p.Cys34Trp missense_variant 0.14
rrs 1472301 n.456C>G non_coding_transcript_exon_variant 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.18
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.15
rrs 1472669 n.824T>C non_coding_transcript_exon_variant 0.15
embB 4247353 c.840C>T synonymous_variant 0.17