TB-Profiler result

Run: SRR5485604
Summary

Run ID: SRR5485604

Sample name:

Date: 18-08-2022 08:22:39

Number of reads: 86154

Percentage reads mapped: 98.91

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6626 p.Ala463Ser missense_variant 0.13
gyrA 7585 p.Ser95Thr missense_variant 1.0
rpoB 761172 p.Gly456Ser missense_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.17
rrs 1473216 n.1371C>T non_coding_transcript_exon_variant 0.17
rrs 1473291 n.1446G>A non_coding_transcript_exon_variant 0.17
rrs 1473303 n.1458T>C non_coding_transcript_exon_variant 0.18
embB 4247693 p.Ala394Thr missense_variant 0.17