TB-Profiler result

Run: SRR5485609
Summary

Run ID: SRR5485609

Sample name:

Date: 18-08-2022 08:22:19

Number of reads: 88840

Percentage reads mapped: 99.36

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761101 p.Gln432Pro missense_variant 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.26
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.17
rrs 1473211 n.1368delA non_coding_transcript_exon_variant 0.18
rrs 1473271 n.1426A>G non_coding_transcript_exon_variant 0.15
pncA 2289047 c.195C>T synonymous_variant 1.0
embB 4247348 p.Thr279Pro missense_variant 0.33
embB 4247352 p.Asp280Ala missense_variant 0.14
embB 4247616 p.Glu368Gly missense_variant 0.17