TB-Profiler result

Run: SRR5485611
Summary

Run ID: SRR5485611

Sample name:

Date: 18-08-2022 08:22:18

Number of reads: 81327

Percentage reads mapped: 99.23

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761114 c.1312_1314delAAC conservative_inframe_deletion 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6631 c.-671C>T upstream_gene_variant 0.14
gyrA 7605 p.Pro102Ser missense_variant 0.14
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.38
rrs 1473370 n.1525T>C non_coding_transcript_exon_variant 0.2
rrl 1473448 n.-210G>C upstream_gene_variant 0.15
eis 2715154 p.Gly60Val missense_variant 0.2
embB 4247397 p.Ala295Val missense_variant 0.18