Run ID: SRR5818447
Sample name:
Date: 04-04-2023 11:30:15
Number of reads: 705395
Percentage reads mapped: 99.86
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6458 | p.Val407Leu | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rpoB | 760209 | p.Asn135Asp | missense_variant | 0.2 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673770 | p.Ala111Pro | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.27 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |