TB-Profiler result

Run: SRR5818465
Summary

Run ID: SRR5818465

Sample name:

Date: 04-04-2023 11:35:39

Number of reads: 559755

Percentage reads mapped: 99.92

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7332 p.Ser11Pro missense_variant 0.67
gyrA 7585 p.Ser95Thr missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
fabG1 1673770 p.Ala111Pro missense_variant 0.23
tlyA 1917972 c.33A>G synonymous_variant 1.0
pncA 2289128 c.114G>C synonymous_variant 1.0
ahpC 2726184 c.-9A>C upstream_gene_variant 0.42