Run ID: SRR6044897
Sample name:
Date: 04-04-2023 11:49:20
Number of reads: 4372
Percentage reads mapped: 7.62
Strain: lineage4.9
Drug-resistance: Sensitive
| Drug | Resistance | Supporting mutations |
|---|
| Lineage | Family | Main Spoligotype | RDs | Frequency |
|---|---|---|---|---|
| lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
| lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
| Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
|---|
| Gene | Chromosome position | Mutation | Type | Estimated fraction |
|---|---|---|---|---|
| ccsA | 620242 | p.Cys118Ser | missense_variant | 1.0 |
| ccsA | 620247 | p.Leu119Phe | missense_variant | 1.0 |
| ccsA | 620249 | p.Ser120Cys | missense_variant | 1.0 |
| ccsA | 620254 | c.364_366delCTCinsTTG | synonymous_variant | 1.0 |
| ccsA | 620264 | p.Gly125Ala | missense_variant | 1.0 |
| ccsA | 620271 | c.381C>T | synonymous_variant | 1.0 |
| rpoB | 761600 | c.1794T>C | synonymous_variant | 1.0 |
| rpoB | 761606 | c.1800C>G | synonymous_variant | 1.0 |
| rpoB | 761936 | c.2130C>T | synonymous_variant | 1.0 |
| rpoB | 761948 | c.2142G>C | synonymous_variant | 1.0 |
| rpoB | 761954 | c.2148C>G | synonymous_variant | 1.0 |
| rpoB | 761969 | c.2163G>A | synonymous_variant | 1.0 |
| rpoB | 761990 | c.2184G>C | synonymous_variant | 1.0 |
| rpoC | 762995 | c.-375G>T | upstream_gene_variant | 1.0 |
| rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
| rpoC | 763040 | c.-330C>G | upstream_gene_variant | 1.0 |
| rpoC | 763053 | c.-317T>C | upstream_gene_variant | 1.0 |
| rpoC | 766408 | c.3039C>T | synonymous_variant | 1.0 |
| rpoC | 766435 | p.Glu1022Asp | missense_variant | 1.0 |
| rpoC | 766456 | c.3087C>G | synonymous_variant | 1.0 |
| rpoC | 766459 | c.3090G>C | synonymous_variant | 1.0 |
| rpoC | 766462 | c.3093G>C | synonymous_variant | 1.0 |
| rpoC | 766573 | c.3204T>C | synonymous_variant | 1.0 |
| rpoC | 766579 | c.3210C>T | synonymous_variant | 1.0 |
| rpoC | 766582 | c.3213C>T | synonymous_variant | 1.0 |
| rpoC | 766585 | c.3216T>C | synonymous_variant | 1.0 |
| rpoC | 766594 | c.3225G>C | synonymous_variant | 1.0 |
| rpoC | 766607 | p.Ile1080Leu | missense_variant | 1.0 |
| mmpL5 | 775916 | c.2565T>G | synonymous_variant | 1.0 |
| mmpL5 | 775943 | c.2538C>G | synonymous_variant | 1.0 |
| mmpL5 | 775951 | c.2530C>T | synonymous_variant | 1.0 |
| mmpL5 | 775961 | c.2520C>G | synonymous_variant | 1.0 |
| mmpL5 | 775966 | p.Ala839Ser | missense_variant | 1.0 |
| mmpL5 | 775972 | p.Ala837Pro | missense_variant | 1.0 |
| mmpL5 | 775973 | p.Leu836Ile | missense_variant | 1.0 |
| mmpL5 | 775981 | p.Leu834Met | missense_variant | 1.0 |
| rpsL | 781682 | c.123T>C | synonymous_variant | 1.0 |
| rpsL | 781685 | c.126G>C | synonymous_variant | 1.0 |
| rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
| rpsA | 1833874 | c.333T>C | synonymous_variant | 1.0 |
| rpsA | 1833894 | p.Ala118Glu | missense_variant | 1.0 |
| rpsA | 1834348 | c.807T>C | synonymous_variant | 1.0 |
| rpsA | 1834361 | c.820T>C | synonymous_variant | 1.0 |
| rpsA | 1834366 | c.825A>G | synonymous_variant | 1.0 |
| rpsA | 1834396 | c.855G>C | synonymous_variant | 1.0 |
| rpsA | 1834411 | c.870T>C | synonymous_variant | 1.0 |
| rpsA | 1834423 | c.882G>C | synonymous_variant | 1.0 |
| rpsA | 1834732 | c.1191T>C | synonymous_variant | 1.0 |
| rpsA | 1834738 | p.Glu399Asp | missense_variant | 1.0 |
| rpsA | 1834740 | p.Thr400Ser | missense_variant | 1.0 |
| rpsA | 1834753 | c.1212T>G | synonymous_variant | 1.0 |
| rpsA | 1834756 | c.1215G>A | synonymous_variant | 1.0 |
| rpsA | 1834759 | c.1218A>C | synonymous_variant | 1.0 |
| rpsA | 1834765 | c.1224A>G | synonymous_variant | 1.0 |
| katG | 2155659 | p.Val151Leu | missense_variant | 1.0 |
| katG | 2155674 | c.438G>T | synonymous_variant | 1.0 |
| katG | 2155677 | c.435C>T | synonymous_variant | 1.0 |
| katG | 2155680 | c.432G>C | synonymous_variant | 1.0 |
| katG | 2155689 | c.421_423delTTGinsCTC | synonymous_variant | 1.0 |
| katG | 2155696 | p.Ala139Val | missense_variant | 1.0 |
| katG | 2155716 | c.396T>G | synonymous_variant | 1.0 |
| katG | 2155722 | c.390G>C | synonymous_variant | 1.0 |
| katG | 2155728 | c.384G>C | synonymous_variant | 1.0 |
| kasA | 2519137 | c.1023T>G | synonymous_variant | 1.0 |
| kasA | 2519143 | c.1029G>C | synonymous_variant | 1.0 |
| kasA | 2519152 | c.1038G>C | synonymous_variant | 1.0 |
| kasA | 2519158 | c.1044C>T | synonymous_variant | 1.0 |
| kasA | 2519183 | p.Leu357Phe | missense_variant | 1.0 |
| clpC1 | 4040644 | c.61A>C | synonymous_variant | 1.0 |
| clpC1 | 4040648 | c.57G>A | synonymous_variant | 1.0 |
| clpC1 | 4040654 | c.51G>A | synonymous_variant | 1.0 |
| clpC1 | 4040674 | c.31A>C | synonymous_variant | 1.0 |
| clpC1 | 4040675 | c.30C>T | synonymous_variant | 1.0 |
| clpC1 | 4040681 | c.24T>G | synonymous_variant | 1.0 |
| clpC1 | 4040690 | c.15T>C | synonymous_variant | 1.0 |
| clpC1 | 4040695 | c.10C>A | synonymous_variant | 1.0 |
| clpC1 | 4040696 | c.9A>G | synonymous_variant | 1.0 |
| clpC1 | 4040699 | c.6C>T | synonymous_variant | 1.0 |
| clpC1 | 4040711 | c.-7G>A | upstream_gene_variant | 1.0 |
| embB | 4248313 | c.1800C>G | synonymous_variant | 1.0 |
| embB | 4248319 | c.1806A>G | synonymous_variant | 1.0 |
| embB | 4248322 | c.1809G>C | synonymous_variant | 1.0 |
