Run ID: SRR6045014
Sample name:
Date: 04-04-2023 11:51:16
Number of reads: 6287
Percentage reads mapped: 2.5
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 764566 | c.1197C>G | synonymous_variant | 1.0 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 1.0 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 1.0 |
rpoC | 764582 | p.Leu405Met | missense_variant | 1.0 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 1.0 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764663 | p.Val432Thr | missense_variant | 1.0 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472349 | n.504A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |