Run ID: SRR6045263
Sample name:
Date: 04-04-2023 11:55:43
Number of reads: 3249
Percentage reads mapped: 0.45
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 1.0 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 1.0 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 1.0 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 1.0 |
rpoC | 763528 | c.159G>A | synonymous_variant | 1.0 |
rpoC | 763534 | c.165T>C | synonymous_variant | 1.0 |
rpoC | 763537 | c.168C>G | synonymous_variant | 1.0 |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
rpoC | 763570 | c.201G>C | synonymous_variant | 1.0 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.5 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.5 |
rpoC | 763609 | c.240C>G | synonymous_variant | 1.0 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474799 | n.1143delT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474803 | n.1146_1147insA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474806 | n.1149A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474853 | n.1196A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475722 | n.2065G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475747 | n.2090A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475767 | n.2110G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475771 | n.2114_2115insTGCGT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475781 | n.2124T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475991 | n.2334T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475996 | n.2339T>G | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833733 | c.192C>G | synonymous_variant | 1.0 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 1.0 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 1.0 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 1.0 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 |
rpsA | 1833991 | c.450C>A | synonymous_variant | 1.0 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 1.0 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 1.0 |
rpsA | 1834012 | c.471G>T | synonymous_variant | 1.0 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 1.0 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 1.0 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
rpoA | 3877737 | c.771G>C | synonymous_variant | 1.0 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 1.0 |
rpoA | 3877752 | p.Asp252Glu | missense_variant | 1.0 |
rpoA | 3877758 | c.750G>C | synonymous_variant | 1.0 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 1.0 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 1.0 |
rpoA | 3877773 | c.735G>C | synonymous_variant | 1.0 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 1.0 |
rpoA | 3877785 | c.723C>A | synonymous_variant | 1.0 |
rpoA | 3877815 | c.693C>T | synonymous_variant | 1.0 |
rpoA | 3877827 | c.681C>T | synonymous_variant | 1.0 |
rpoA | 3877836 | c.672A>G | synonymous_variant | 1.0 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 1.0 |
rpoA | 3877848 | c.660C>G | synonymous_variant | 1.0 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 1.0 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 1.0 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 1.0 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 1.0 |
clpC1 | 4039628 | c.1077C>G | synonymous_variant | 1.0 |
clpC1 | 4039640 | c.1065C>G | synonymous_variant | 1.0 |
clpC1 | 4039646 | c.1059G>A | synonymous_variant | 1.0 |
clpC1 | 4039649 | c.1056G>T | synonymous_variant | 1.0 |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 1.0 |