Run ID: SRR6045358
Sample name:
Date: 04-04-2023 11:57:39
Number of reads: 11240
Percentage reads mapped: 0.29
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474171 | n.514C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474185 | n.528G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474199 | n.542G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 1.0 |
PPE35 | 2168643 | p.Phe657Tyr | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |