TB-Profiler result

Run: SRR6045641
Summary

Run ID: SRR6045641

Sample name:

Date: 04-04-2023 12:02:54

Number of reads: 19229

Percentage reads mapped: 0.86

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5086 c.-154A>T upstream_gene_variant 1.0
rpoC 764890 c.1521G>A synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473355 n.1510G>A non_coding_transcript_exon_variant 1.0
alr 3841473 c.-53G>A upstream_gene_variant 1.0
alr 3841546 c.-126C>A upstream_gene_variant 0.5
embC 4242075 p.Arg738Gln missense_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0