TB-Profiler result

Run: SRR6045924
Summary

Run ID: SRR6045924

Sample name:

Date: 04-04-2023 12:07:43

Number of reads: 2369

Percentage reads mapped: 73.57

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5861 c.622C>T synonymous_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoC 764032 p.Asp221Glu missense_variant 1.0
rpoC 764040 p.Ser224Thr missense_variant 1.0
rpoC 764044 c.675T>C synonymous_variant 1.0
rpoC 764054 c.685C>T synonymous_variant 1.0
rpoC 764059 c.690G>T synonymous_variant 1.0
rpoC 764083 c.714A>G synonymous_variant 1.0
rpoC 764084 p.Asn239Val missense_variant 1.0
rpoC 764098 c.729A>G synonymous_variant 1.0
rpoC 764110 c.741C>T synonymous_variant 1.0
clpC1 4039868 c.837C>T synonymous_variant 0.5
clpC1 4039913 c.792C>T synonymous_variant 1.0