TB-Profiler result

Run: SRR6045976
Summary

Run ID: SRR6045976

Sample name:

Date: 04-04-2023 12:08:36

Number of reads: 287

Percentage reads mapped: 1.91

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>G non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>G non_coding_transcript_exon_variant 1.0
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 1.0
clpC1 4038755 c.1950G>C synonymous_variant 1.0
clpC1 4038768 p.Arg646Leu missense_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 1.0
clpC1 4038782 c.1923G>C synonymous_variant 1.0
clpC1 4038790 c.1915C>T synonymous_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038815 c.1890G>T synonymous_variant 1.0