Run ID: SRR6046587
Sample name:
Date: 04-04-2023 12:19:28
Number of reads: 254694
Percentage reads mapped: 98.94
Strain:
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6178 | c.939C>G | synonymous_variant | 0.29 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7826 | c.527dupA | frameshift_variant | 0.29 |
gyrA | 8948 | c.1647G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 778296 | p.Val62Gly | missense_variant | 0.5 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407524 | c.-184A>C | upstream_gene_variant | 0.67 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476567 | n.2910C>G | non_coding_transcript_exon_variant | 0.67 |
tlyA | 1918382 | p.Val148Gly | missense_variant | 0.67 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155304 | p.His270Asn | missense_variant | 0.5 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168428 | p.Ile729Val | missense_variant | 0.29 |
PPE35 | 2168636 | c.1976dupC | frameshift_variant | 0.18 |
PPE35 | 2170760 | c.-148A>G | upstream_gene_variant | 0.22 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.89 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
alr | 3840354 | p.Asp356Gly | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embB | 4247421 | p.Ile303Thr | missense_variant | 0.4 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407703 | p.Ala167Asp | missense_variant | 1.0 |