Run ID: SRR6046646
Sample name:
Date: 20-10-2023 18:09:51
Number of reads: 3642638
Percentage reads mapped: 96.42
Strain: lineage4.7
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | R | rrs n.888G>A (0.32) |
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.32 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
whiB7 | 3568610 | p.Asp24His | missense_variant | 1.0 |
alr | 3840618 | p.Asp268Gly | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243929 | p.Leu233Met | missense_variant | 1.0 |
embB | 4247535 | p.Thr341Asn | missense_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |