Run ID: SRR6257093
Sample name:
Date: 04-04-2023 13:25:59
Number of reads: 185670
Percentage reads mapped: 100.0
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490662 | c.-121G>A | upstream_gene_variant | 0.17 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764086 | p.Asn239Lys | missense_variant | 0.18 |
rpoC | 764403 | p.Arg345Leu | missense_variant | 0.22 |
rpoC | 764801 | p.Arg478Ser | missense_variant | 0.22 |
rpoC | 765218 | p.Glu617Lys | missense_variant | 0.11 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303650 | c.720G>C | synonymous_variant | 0.18 |
fbiC | 1304671 | p.Val581Leu | missense_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
atpE | 1461080 | c.36C>T | synonymous_variant | 0.33 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154696 | c.1416A>G | synonymous_variant | 0.18 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168406 | p.Leu736Pro | missense_variant | 0.25 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289124 | p.Asp40Asn | missense_variant | 0.15 |
Rv2752c | 3065769 | c.423C>T | synonymous_variant | 0.22 |
thyA | 3074641 | c.-170C>T | upstream_gene_variant | 0.22 |
ald | 3086731 | c.-89A>G | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449692 | c.1189C>T | synonymous_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474917 | p.Ala304Val | missense_variant | 0.29 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
Rv3236c | 3612939 | p.Thr60Ala | missense_variant | 0.17 |
fbiA | 3641199 | p.Ser219Arg | missense_variant | 0.22 |
alr | 3840645 | p.Gly259Val | missense_variant | 0.18 |
alr | 3841496 | c.-76A>G | upstream_gene_variant | 0.5 |
ddn | 3986950 | p.Gly36Ala | missense_variant | 0.4 |
panD | 4043867 | p.Gly139* | stop_gained | 1.0 |
embC | 4241308 | c.1446C>T | synonymous_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246985 | c.473_474delTC | frameshift_variant | 0.14 |
embB | 4248055 | c.1542G>A | synonymous_variant | 0.2 |
embB | 4249427 | p.Arg972Ser | missense_variant | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ubiA | 4269244 | p.His197Arg | missense_variant | 0.2 |
ethA | 4326422 | p.Gly351Val | missense_variant | 0.2 |
ethA | 4327113 | p.Gln121Lys | missense_variant | 0.17 |
whiB6 | 4338511 | p.Ala4Asp | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |