Run ID: SRR6650386
Sample name:
Date: 04-04-2023 15:23:49
Number of reads: 1148384
Percentage reads mapped: 99.74
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1417133 | p.Ile72Thr | missense_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154898 | p.Ala405Val | missense_variant | 0.1 |
katG | 2156453 | c.-342C>T | upstream_gene_variant | 0.22 |
PPE35 | 2167916 | c.2696delT | frameshift_variant | 0.11 |
PPE35 | 2168837 | c.1776G>A | synonymous_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.17 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747556 | p.Thr15Ala | missense_variant | 1.0 |
Rv2752c | 3067077 | c.-886G>C | upstream_gene_variant | 0.15 |
Rv2752c | 3067101 | c.-910C>T | upstream_gene_variant | 0.17 |
ald | 3087899 | c.1080G>C | synonymous_variant | 1.0 |
fprA | 3475037 | p.Val344Ala | missense_variant | 0.11 |
fbiA | 3641242 | p.Arg234Trp | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethR | 4327306 | c.-243G>A | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407609 | c.594G>A | synonymous_variant | 0.17 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |