Run ID: SRR6785461
Sample name:
Date: 04-04-2023 15:57:44
Number of reads: 1797850
Percentage reads mapped: 99.75
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6157 | c.918C>T | synonymous_variant | 0.22 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.18 |
rpoB | 759912 | p.Ala36Thr | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472743 | n.898T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673346 | c.-94C>G | upstream_gene_variant | 0.15 |
fabG1 | 1673349 | c.-91G>C | upstream_gene_variant | 0.16 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169732 | p.Asn294Ser | missense_variant | 0.17 |
PPE35 | 2169760 | p.Gly285Cys | missense_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.37 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.35 |
PPE35 | 2170135 | p.Ala160Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3087625 | p.Ile269Thr | missense_variant | 0.1 |
clpC1 | 4040249 | p.Glu152Asp | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.43 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |