TB-Profiler result

Run: SRR6831935

Summary

Run ID: SRR6831935

Sample name:

Date: 04-04-2023 17:07:34

Number of reads: 2619618

Percentage reads mapped: 99.49

Strain: lineage4

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6054 p.His272Pro missense_variant 0.98
gyrA 7362 p.Glu21Gln missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
embR 1417211 p.Arg46His missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpsA 1833447 c.-95C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154980 c.1132C>T synonymous_variant 1.0
PPE35 2168460 p.Asn718Ser missense_variant 1.0
PPE35 2169761 c.852C>T synonymous_variant 0.96
PPE35 2170811 c.-199C>T upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
fprA 3474031 p.Val9Met missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244909 c.1686_1688delGCT disruptive_inframe_deletion 0.1
embB 4249522 c.3009C>T synonymous_variant 1.0
aftB 4268076 p.Met254Ala missense_variant 1.0
whiB6 4338538 c.-17T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0