TB-Profiler result

Run: SRR6832087

Summary

Run ID: SRR6832087

Sample name:

Date: 04-04-2023 17:13:18

Number of reads: 3704399

Percentage reads mapped: 99.48

Strain: lineage4

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7892 c.591G>A synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
ccsA 620619 c.729G>A synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
atpE 1460861 c.-184C>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 0.98
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
folC 2746438 c.1161G>A synonymous_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612775 p.Asp114Glu missense_variant 1.0
rpoA 3878575 c.-68C>T upstream_gene_variant 0.8
clpC1 4038318 p.Pro796Leu missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
aftB 4267652 p.Met395Ile missense_variant 1.0
ubiA 4269944 c.-111G>A upstream_gene_variant 1.0
ethA 4327310 p.Ser55Cys missense_variant 0.98
whiB6 4338595 c.-75delG upstream_gene_variant 1.0