TB-Profiler result

Run: SRR6855772
Summary

Run ID: SRR6855772

Sample name:

Date: 04-04-2023 17:45:14

Number of reads: 1359298

Percentage reads mapped: 99.7

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mshA 576500 p.Ile385Leu missense_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
fprA 3474379 c.375delC frameshift_variant 1.0
embA 4244889 p.Ile553Phe missense_variant 0.17
embA 4246362 p.Thr1044Pro missense_variant 0.13
whiB6 4338595 c.-75delG upstream_gene_variant 1.0