Run ID: SRR6896578
Sample name:
Date: 04-04-2023 18:10:28
Number of reads: 642214
Percentage reads mapped: 98.94
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7823 | c.522G>T | synonymous_variant | 0.12 |
ccsA | 620027 | p.Pro46Gln | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474625 | n.968T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476048 | n.2391G>T | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673323 | c.-117C>A | upstream_gene_variant | 0.14 |
inhA | 1674640 | p.Met147Val | missense_variant | 0.13 |
tlyA | 1917842 | c.-98G>C | upstream_gene_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167674 | p.Leu980Gln | missense_variant | 0.15 |
PPE35 | 2170046 | c.567C>A | synonymous_variant | 0.13 |
PPE35 | 2170509 | p.Ala35Val | missense_variant | 0.14 |
kasA | 2518528 | c.414C>A | synonymous_variant | 0.11 |
folC | 2746870 | p.Glu243Asp | missense_variant | 0.17 |
pepQ | 2860000 | p.Leu140Pro | missense_variant | 0.13 |
Rv2752c | 3064574 | p.Trp540Gly | missense_variant | 0.11 |
Rv2752c | 3064850 | p.Phe448Leu | missense_variant | 0.11 |
thyX | 3068078 | c.-133A>G | upstream_gene_variant | 0.12 |
fprA | 3475304 | p.Ala433Asp | missense_variant | 0.11 |
Rv3236c | 3612515 | p.Arg201His | missense_variant | 0.18 |
fbiA | 3640472 | c.-71G>C | upstream_gene_variant | 0.11 |
clpC1 | 4038251 | p.Phe818Leu | missense_variant | 0.11 |
embC | 4241554 | c.1692G>T | synonymous_variant | 0.15 |
embA | 4245397 | p.Asn722Ser | missense_variant | 0.11 |
embB | 4246250 | c.-264G>T | upstream_gene_variant | 0.12 |
embB | 4248654 | p.Met714Thr | missense_variant | 0.11 |
embB | 4249255 | c.2742G>T | synonymous_variant | 0.11 |
whiB6 | 4338593 | c.-73delT | upstream_gene_variant | 1.0 |
whiB6 | 4338596 | c.-75G>C | upstream_gene_variant | 1.0 |