TB-Profiler result

Run: SRR6982228
Summary

Run ID: SRR6982228

Sample name:

Date: 04-04-2023 18:31:11

Number of reads: 382825

Percentage reads mapped: 99.77

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
ccsA 620193 c.303C>A synonymous_variant 0.14
embR 1416246 p.His368Tyr missense_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2168552 c.2061T>C synonymous_variant 0.12
pncA 2290238 c.-997A>G upstream_gene_variant 0.12
Rv3083 3449713 p.Ala404Thr missense_variant 1.0
Rv3236c 3612442 c.675C>A synonymous_variant 0.11
clpC1 4038252 p.Phe818Ser missense_variant 0.18
embB 4246690 c.177A>T synonymous_variant 0.12
aftB 4269504 c.-668A>T upstream_gene_variant 0.11
whiB6 4338593 c.-73delT upstream_gene_variant 1.0
whiB6 4338596 c.-75G>C upstream_gene_variant 1.0