TB-Profiler result

Run: SRR8571812
Summary

Run ID: SRR8571812

Sample name:

Date: 04-04-2023 21:29:02

Number of reads: 11684292

Percentage reads mapped: 99.77

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpoA 3878490 c.18C>G synonymous_variant 0.35
embB 4247028 p.Leu172Gln missense_variant 0.17
aftB 4267894 p.Ile315Phe missense_variant 0.21