TB-Profiler result

Run: SRR8692853
Summary

Run ID: SRR8692853

Sample name:

Date: 13-08-2023 22:32:01

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474344 n.687G>T non_coding_transcript_exon_variant 0.13
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.13
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.14
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.12
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.12
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.13
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.18
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.25
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.2
rrl 1475656 n.1999G>T non_coding_transcript_exon_variant 0.17
rrl 1475927 n.2270G>T non_coding_transcript_exon_variant 0.94