TB-Profiler result

Run: SRR8791302
Summary

Run ID: SRR8791302

Sample name:

Date: 18-08-2022 12:24:23

Number of reads: 441970

Percentage reads mapped: 99.29

Strain:

Drug-resistance: RR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761277 p.Ile491Phe missense_variant 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761283 p.Ser493Ala missense_variant 0.14
rpoB 761293 p.Val496Gly missense_variant 0.14