TB-Profiler result

Run: SRR9940954
Summary

Run ID: SRR9940954

Sample name:

Date: 04-04-2023 23:00:40

Number of reads: 1343919

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 620748 c.858T>G synonymous_variant 0.26
rpoB 761817 p.Arg671Trp missense_variant 0.11
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2170598 c.15G>A synonymous_variant 1.0
ahpC 2726338 p.Val49Gly missense_variant 0.29
folC 2746745 p.Val285Gly missense_variant 0.29
fbiD 3339273 c.156T>G synonymous_variant 0.23
embC 4240648 c.786C>T synonymous_variant 0.22