TB-Profiler result

Run: SRR9940958
Summary

Run ID: SRR9940958

Sample name:

Date: 04-04-2023 23:00:50

Number of reads: 1038710

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 619831 c.-60T>G upstream_gene_variant 0.29
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2169781 p.Gly278* stop_gained 0.11
PPE35 2170598 c.15G>A synonymous_variant 1.0
ahpC 2726338 p.Val49Gly missense_variant 0.26
thyA 3074645 c.-174T>G upstream_gene_variant 0.25
embA 4244761 p.Asn510Ser missense_variant 0.11
ethA 4326863 p.Met204Thr missense_variant 1.0