TB-Profiler result

Run: SRR9940961

Summary

Run ID: SRR9940961

Sample name:

Date: 04-04-2023 23:01:04

Number of reads: 986251

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fgd1 490751 c.-32T>G upstream_gene_variant 0.27
mshA 576751 p.Lys468Asn missense_variant 0.2
ccsA 619831 c.-60T>G upstream_gene_variant 0.28
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1918054 p.Ala39Ser missense_variant 0.17
PPE35 2170093 p.Leu174Ile missense_variant 0.14
PPE35 2170598 c.15G>A synonymous_variant 1.0
folC 2747690 c.-92G>A upstream_gene_variant 0.1
aftB 4269302 c.-466C>T upstream_gene_variant 0.1
ethA 4326863 p.Met204Thr missense_variant 1.0