Run ID: SRR9940970
Sample name:
Date: 04-04-2023 23:01:28
Number of reads: 1292522
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576526 | c.1179C>T | synonymous_variant | 0.1 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.23 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
PPE35 | 2169616 | p.Asn333Asp | missense_variant | 0.12 |
PPE35 | 2169887 | c.726C>T | synonymous_variant | 0.12 |
PPE35 | 2170598 | c.15G>A | synonymous_variant | 1.0 |