Run ID: SRR9940981
Sample name:
Date: 04-04-2023 23:02:01
Number of reads: 1194126
Percentage reads mapped: 99.44
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6927 | p.Leu563Trp | missense_variant | 0.2 |
fgd1 | 491478 | p.Lys232Asn | missense_variant | 0.12 |
rpoB | 760178 | c.372G>A | synonymous_variant | 0.12 |
rplC | 801352 | p.Val182Met | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473153 | n.1308G>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475335 | n.1678G>T | non_coding_transcript_exon_variant | 0.18 |
inhA | 1674951 | c.750G>T | synonymous_variant | 0.1 |
tlyA | 1918719 | c.780G>T | synonymous_variant | 0.11 |
PPE35 | 2170250 | c.363G>T | synonymous_variant | 0.11 |
PPE35 | 2170598 | c.15G>A | synonymous_variant | 1.0 |
PPE35 | 2170643 | c.-31G>T | upstream_gene_variant | 0.1 |
Rv1979c | 2222465 | p.Gly234Cys | missense_variant | 0.11 |
kasA | 2518151 | p.Ser13Arg | missense_variant | 0.23 |
pepQ | 2860063 | c.355delA | frameshift_variant | 1.0 |
embC | 4243033 | p.Trp1057Cys | missense_variant | 0.11 |
embB | 4248696 | p.Arg728Leu | missense_variant | 0.18 |
aftB | 4267725 | p.Leu371Pro | missense_variant | 0.11 |