TB-Profiler result

Run: SRR9940982
Summary

Run ID: SRR9940982

Sample name:

Date: 04-04-2023 23:02:10

Number of reads: 831597

Percentage reads mapped: 99.69

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 620748 c.858T>G synonymous_variant 0.26
mmpR5 779426 p.Met146Arg missense_variant 0.12
mmpR5 779454 c.466dupC frameshift_variant 0.54
fbiC 1303016 p.Val29Gly missense_variant 0.19
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2170235 c.378T>C synonymous_variant 0.1
PPE35 2170598 c.15G>A synonymous_variant 1.0
thyX 3067309 p.Ile213Val missense_variant 0.11
thyX 3067472 c.474C>A synonymous_variant 0.12
Rv3083 3449143 p.Pro214Thr missense_variant 0.13
panD 4044152 p.Val44Ile missense_variant 0.1
embC 4242576 p.Gln905Arg missense_variant 0.13