TB-Profiler result

Run: SRR9940990
Summary

Run ID: SRR9940990

Sample name:

Date: 04-04-2023 23:02:25

Number of reads: 1136750

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 759620 c.-187A>C upstream_gene_variant 0.25
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1918034 p.Val32Gly missense_variant 0.2
tlyA 1918725 c.786T>A synonymous_variant 0.11
PPE35 2170066 p.Ala183Thr missense_variant 0.14
PPE35 2170598 c.15G>A synonymous_variant 1.0
ahpC 2726341 p.Val50Gly missense_variant 0.19
Rv3083 3448515 c.12T>C synonymous_variant 0.1