Run ID: SRR9940995
Sample name:
Date: 04-04-2023 23:02:59
Number of reads: 1280989
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.16 |
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.43 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.2 |
rpoB | 761526 | p.Asp574Asn | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
PPE35 | 2170598 | c.15G>A | synonymous_variant | 1.0 |
ahpC | 2726341 | p.Val50Gly | missense_variant | 0.21 |