TB-Profiler result

Run: SRR9941001

Summary

Run ID: SRR9941001

Sample name:

Date: 04-04-2023 23:03:18

Number of reads: 1167987

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576750 p.Lys468Thr missense_variant 0.14
mmpR5 779113 p.Trp42Gly missense_variant 0.17
mmpR5 779454 c.466dupC frameshift_variant 0.93
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.12
PPE35 2170598 c.15G>A synonymous_variant 1.0