EBG00000313325 - n.336G>A
Drug resistance types
28 Sensitive
1 RR-TB
59 HR-TB
27 MDR-TB
37 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1.2 | 3 |
| La1.7.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.8 | 9 |
| lineage4.1.2.1 | 7 |
| lineage4.2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.2 | 21 |
| lineage3 | 11 |
| La2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1 | 36 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.4.2 | 4 |
| lineage4.3.3 | 7 |
| lineage4.6.1.2 | 2 |
| lineage4.9.1 | 1 |
| lineage4.5 | 3 |
| lineage2.2.1.1 | 2 |
| lineage4.2.2.2 | 1 |
| La1.8.1 | 3 |
| lineage4.1.1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1 | 1 |
| 11 | |
| lineage3.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.6 | 1 |
| lineage4.2.1 | 2 |
| lineage4.9 | 13 |
| lineage4 | 5 |
| La1.8 | 1 |
| La1.3 | 1 |
| lineage2.2 | 23 |
| lineage4.4.1.1 | 1 |
| lineage4;lineage2.2.2 | 1 |
| lineage4.9;lineage2 | 1 |
| lineage4.8.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 190 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18213800 | Other | lineage3.1.2 | None | SRR18053779 | Other | La1.7.1 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19303788 | Sensitive | lineage4.8 | None | SRR19303792 | Sensitive | lineage4.1.2.1 | None | SRR21746998 | MDR-TB | lineage4.2.2 | None | SRR2101816 | Other | lineage4.8 | None | SRR19303779 | Sensitive | lineage4.8 | None | ERR181733 | Sensitive | lineage4.3.4.2.1 | None | ERR11067703 | Sensitive | lineage4.1.2.1 | None | ERR5758391 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815613 | Other | lineage3 | None | ERR1462610 | Other | La2 | None | ERR4814943 | Sensitive | lineage4.8 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR3675273 | Sensitive | lineage3 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR4814748 | Other | lineage4.8 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR176672 | Sensitive | lineage4.3.4.2.1 | None | ERR4815898 | Other | lineage3 | None | ERR212028 | Sensitive | lineage4.3.4.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR4819087 | Other | lineage4.3.3 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818188 | Other | lineage4.1.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275353 | Sensitive | lineage4.6.1.2 | None | ERR245772 | Sensitive | lineage4.9.1 | None | ERR2446198 | Sensitive | lineage4.6.1.2 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR4820511 | Sensitive | lineage4.3.3 | None | SRR5217421 | Sensitive | lineage2.2.1 | None | ERR270771 | HR-TB | lineage3 | None | ERR4820100 | Other | lineage4.3.3 | None | SAMN02360585 | HR-TB | lineage4.5 | None | ERR1873510 | Pre-XDR-TB | lineage2.2.2 | za | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR4821776 | Sensitive | lineage4.2.2.2 | None | SRR5382721 | Other | La1.8.1 | None | ERR2747678 | Other | La1.8.1 | None | ERR4821927 | HR-TB | lineage4.3.4.1 | None | SRR6045683 | Other | lineage3.1.2 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR4821563 | HR-TB | lineage1.1.2 | gb | ERR4821635 | Other | lineage4.8 | None | SRR6045584 | Sensitive | lineage4.1.2.1 | None | SRR6046246 | Other | lineage3 | None | SRR6045910 | Other | lineage3.1 | None | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6045289 | Other | None | SRR6046761 | Other | lineage3 | gb | SRR6046607 | Other | lineage3 | None | SRR6832359 | Sensitive | lineage2.2.1 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6650411 | Sensitive | lineage1.1.3.1 | None | SRR6832103 | MDR-TB | lineage2.2.1 | None | ERR4872193 | MDR-TB | lineage4.6 | None | SRR6785282 | Other | lineage4.3.3 | None | SRR6824423 | Sensitive | lineage4.4.2 | None | SRR6832659 | Other | lineage4.2.1 | None | ERR3439281 | Sensitive | lineage4.9 | None | SRR7645900 | Sensitive | lineage4.8 | None | SRR7755643 | Pre-XDR-TB | lineage4.2.1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3439280 | Other | La1.8 | None | SRR7131004 | Other | lineage4.6.2.2 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR3439282 | Sensitive | lineage4.9 | None | ERR405191 | Other | lineage4.9 | None | ERR3797035 | Other | lineage4.9 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR4188202 | Other | La1.8.1 | None | ERR4769546 | Other | La1.3 | None | ERR4769419 | Other | lineage4.9 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR5865950 | MDR-TB | lineage2.2.1 | None | ERR5908213 | Sensitive | lineage4.3.3 | None | ERR752034 | Sensitive | lineage2.2.1 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117806 | Other | lineage4.8 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013598 | HR-TB | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013617 | MDR-TB | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048885 | MDR-TB | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048982 | HR-TB | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR11342675 | Pre-XDR-TB | lineage4.8.1 | None | SRR1173416 | Other | lineage4.9 | None | SRR11349134 | Pre-XDR-TB | lineage4.8.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173720 | Other | lineage4.9 | None | SRR11972432 | MDR-TB | lineage2.2.1 | None | SRR12080291 | MDR-TB | lineage2.2.1 | None | SRR15315871 | Sensitive | lineage4.9 | None |
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