EBG00000313339 - n.2434T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
4 HR-TB
91 MDR-TB
60 Pre-XDR-TB
5 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 151 |
| lineage2.2.1;lineage4.2.1 | 5 |
| lineage2.2.1;lineage4.2.1.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2;lineage4.2.1 | 1 |
| lineage2.2.1;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 161 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR23310989 | MDR-TB | lineage2.2.1 | None | SRR10379895 | MDR-TB | lineage2.2.1 | None | SRR10379882 | MDR-TB | lineage2.2.1 | None | SRR7755708 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166157 | MDR-TB | lineage2.2.1 | None | SRR1169159 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166303 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645929 | RR-TB | lineage2.2.1 | None | ERR13285764 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782196 | MDR-TB | lineage2.2.1 | None | SRR1166227 | MDR-TB | lineage2.2.1 | None | SRR7755705 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7645956 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645887 | MDR-TB | lineage2.2.1 | None | SRR10379887 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351636 | MDR-TB | lineage2.2.1 | None | SRR14807601 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782461 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762385 | MDR-TB | lineage2.2.1 | None | SRR14782323 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276174 | XDR-TB | lineage2.2.1 | None | SRR10380096 | MDR-TB | lineage2.2.1 | None | ERR11798607 | MDR-TB | lineage2.2.1 | None | SRR29358138 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02584644 | MDR-TB | lineage2.2.1 | md | SRR28351300 | MDR-TB | lineage2.2.1 | None | SRR28498567 | MDR-TB | lineage2.2.1 | None | ERR7910920 | MDR-TB | lineage2.2.1 | md | SRR14782475 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351251 | MDR-TB | lineage2.2.1 | None | ERR13285798 | MDR-TB | lineage2.2.1 | None | ERR10762247 | MDR-TB | lineage2.2.1 | None | ERR10762482 | MDR-TB | lineage2.2.1 | None | SRR14781955 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380222 | MDR-TB | lineage2.2.1 | None | SRR23310968 | MDR-TB | lineage2.2.1 | None | SRR14782568 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872304 | MDR-TB | lineage2.2.1 | None | ERR4872351 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645874 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR28498724 | MDR-TB | lineage2.2.1 | None | SRR23311038 | MDR-TB | lineage2.2.1 | None | ERR10762296 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510707 | MDR-TB | lineage2.2.1 | it | SRR7646064 | MDR-TB | lineage2.2.1 | None | SRR28351199 | MDR-TB | lineage2.2.1 | None | SRR28351624 | MDR-TB | lineage2.2.1 | None | SRR14782083 | MDR-TB | lineage2.2.1 | None | SRR23310956 | MDR-TB | lineage2.2.1 | None | ERR11798614 | MDR-TB | lineage2.2.1 | None | SRR7755696 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None | SRR7755702 | Pre-XDR-TB | lineage2.2.1 | None | SRR14781983 | MDR-TB | lineage2.2.1 | None | SRR14802017 | MDR-TB | lineage2.2.1 | None | SRR3743399 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801916 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798608 | MDR-TB | lineage2.2.1 | None | ERR11798615 | MDR-TB | lineage2.2.1 | None | ERR4872328 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755704 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7755686 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801329 | MDR-TB | lineage2.2.1 | None | SRR7755763 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798611 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755647 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782285 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260097 | MDR-TB | lineage2.2.1 | None | SAMN02584596 | Pre-XDR-TB | lineage2.2.1 | md | SAMN02584597 | MDR-TB | lineage2.2.1 | md | ERR1353082 | MDR-TB | lineage2.2.1 | None | ERR11043975 | XDR-TB | lineage2.2.1 | None | SRR3743404 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798612 | MDR-TB | lineage2.2.1 | None | ERR10762236 | MDR-TB | lineage2.2.1 | None | ERR7911261 | MDR-TB | lineage2.2.1 | md | SRR28498681 | MDR-TB | lineage2.2.1 | None | SRR1168994 | MDR-TB | lineage2.2.1 | None | ERR7911082 | MDR-TB | lineage2.2.1 | md | ERR7911093 | MDR-TB | lineage2.2.1 | md | ERR7911036 | MDR-TB | lineage2.2.1 | md | SRR7645840 | MDR-TB | lineage2.2.1 | None | SRR14802241 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755738 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR11798616 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762472 | MDR-TB | lineage2.2.1 | None | SRR14782606 | MDR-TB | lineage2.2.1 | None | SRR14801525 | MDR-TB | lineage2.2.1 | None | SRR7645831 | MDR-TB | lineage2.2.1 | None | ERR13276137 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645889 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | SRR5153834 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798606 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801341 | MDR-TB | lineage2.2.1 | None | SRR28498546 | XDR-TB | lineage2.2.1 | None | SRR28498374 | MDR-TB | lineage2.2.1 | None | SRR7755663 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044415 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798613 | MDR-TB | lineage2.2.1 | None | SRR10380033 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351637 | MDR-TB | lineage2.2.1 | None | SRR7755675 | MDR-TB | lineage2.2.1 | None | SRR7755689 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR10380020 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755744 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782510 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645861 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755731 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801915 | MDR-TB | lineage2.2.1 | None | SRR7755673 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351200 | HR-TB | lineage2.2.1 | None | ERR4872262 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801597 | Pre-XDR-TB | lineage2.2.1 | None | SRR23311077 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379974 | MDR-TB | lineage2.2.1 | None | SRR10379905 | MDR-TB | lineage2.2.1 | None | ERR13285835 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802066 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801354 | MDR-TB | lineage2.2.1 | None | ERR11798669 | Pre-XDR-TB | lineage2.2;lineage4.2.1 | None | ERR10762354 | MDR-TB | lineage2.2.1 | None | ERR13285777 | MDR-TB | lineage2.2.1 | None | SRR14802196 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310847 | MDR-TB | lineage2.2.1 | None | SRR28351219 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762464 | Pre-XDR-TB | lineage2.2.1 | None | ERR7910966 | MDR-TB | lineage2.2.1 | md | ERR4829827 | Pre-XDR-TB | lineage2.2.1 | it | ERR4828817 | MDR-TB | lineage2.2.1 | None | ERR4872271 | XDR-TB | lineage2.2.1 | None | ERR7911032 | MDR-TB | lineage2.2.1 | md | ERR1353083 | MDR-TB | lineage2.2.1 | None | SRR14782421 | MDR-TB | lineage2.2.1 | None | SRR14801996 | HR-TB | lineage2.2.1 | None | SRR5153853 | MDR-TB | lineage2.2.1 | None | SRR6807685 | MDR-TB | lineage2.2.1 | None | SRR28498678 | MDR-TB | lineage2.2.1 | None | SRR14782174 | MDR-TB | lineage2.2.1 | None | SRR7645946 | MDR-TB | lineage2.2.1 | None | ERR11044004 | XDR-TB | lineage2.2.1 | None | ERR13285908 | MDR-TB | lineage2.2.1 | None | SRR14782562 | HR-TB | lineage2.2.1 | None | SRR14801496 | MDR-TB | lineage2.2.1 | None | SRR7755718 | MDR-TB | lineage2.2.1 | None | SRR1169035 | MDR-TB | lineage2.2.1 | None | SRR14782547 | HR-TB | lineage2.2.1 | None | SRR13243563 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801747 | MDR-TB | lineage2.2.1 | None | SRR14801912 | MDR-TB | lineage2.2.1 | None | SRR5153923 | MDR-TB | lineage2.2.1 | None | SRR7646051 | Pre-XDR-TB | lineage2.2.1;lineage4.2 | None | SRR14802140 | MDR-TB | lineage2.2.1 | None | SRR16088414 | MDR-TB | lineage2.2.1 | None | SRR10380123 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798609 | MDR-TB | lineage2.2.1 | None | ERR13285723 | MDR-TB | lineage2.2.1 | None | SRR10380068 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380178 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285787 | MDR-TB | lineage2.2.1 | None | ERR11798610 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285735 | MDR-TB | lineage2.2.1 | None | SRR14782081 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None |
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