Rv0005 - c.1931_1933delCCG
Drug resistance types
76 Sensitive
11 RR-TB
3 HR-TB
22 MDR-TB
20 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.3 | 3 |
| La1.7.1 | 33 |
| lineage4.4.1.1 | 25 |
| lineage2.2.1.1 | 5 |
| lineage1.1.2 | 23 |
| lineage2.2.1 | 18 |
| lineage4 | 2 |
| lineage4.3.2 | 6 |
| lineage1.1.3.2 | 2 |
| lineage4.8 | 10 |
| lineage4.1.2.1 | 5 |
| lineage2.2.2 | 4 |
| lineage1.2.2.2 | 19 |
| lineage4.1.1 | 2 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
| lineage4.5 | 2 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.3 | 2 |
| lineage2.1 | 2 |
| lineage4.1.1.3 | 1 |
| 1 | |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.2.2.2 | 2 |
| lineage3 | 3 |
| lineage4.6.1.1 | 1 |
| lineage1.2.2.2;lineage4.3.3 | 1 |
| lineage9 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 185 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR752163 | Sensitive | lineage1.1.3 | th | SRR1792109 | Other | La1.7.1 | None | SRR6397818 | RR-TB | lineage4.4.1.1 | None | SRR960989 | Pre-XDR-TB | lineage2.2.1.1 | cn | ERR2510338 | MDR-TB | lineage1.1.2 | pk | SRR28119759 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813107 | Pre-XDR-TB | lineage4 | None | ERR2516122 | Other | lineage4.3.2 | es | SRR6397732 | RR-TB | lineage4.4.1.1 | ca | ERR2513459 | Sensitive | lineage1.1.3.2 | gb | ERR4828194 | Other | lineage2.2.1 | vn | SAMN02598984 | Sensitive | lineage1.1.2 | in | SRR6397377 | Sensitive | lineage4.4.1.1 | ca | ERR11043138 | RR-TB | lineage4.8 | None | SRR1791858 | Other | La1.7.1 | None | SRR6397453 | Sensitive | lineage4.4.1.1 | ca | ERR019574 | Other | lineage2.2.1 | None | ERR4821148 | Sensitive | lineage4.1.2.1 | gb | SRR16058477 | Sensitive | lineage1.1.2 | None | DRR188482 | Other | lineage2.2.2 | None | ERR1034588 | Pre-XDR-TB | lineage1.2.2.2 | pk | SRR1792027 | Other | La1.7.1 | None | SRR1791909 | Other | La1.7.1 | None | ERR11043250 | Sensitive | lineage4.1.2.1 | None | ERR6866081 | Other | lineage4.1.1 | None | SRR1172134 | Sensitive | lineage1.1.2 | None | ERR9124963 | Sensitive | lineage1.1.2 | None | SRR25827748 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR7069567 | Sensitive | lineage1.1.3.2 | None | SRR1792147 | Other | La1.7.1 | None | SRR21277120 | Sensitive | lineage4.5 | None | SRR6397616 | Sensitive | lineage4.4.1.1 | ca | SRR29274110 | MDR-TB | lineage4.8 | None | SRR11972347 | MDR-TB | lineage2.2.1 | None | SRR6397419 | Sensitive | lineage4.4.1.1 | ca | ERR2510548 | Pre-XDR-TB | lineage1.1.2;lineage4 | pk | SRR6152875 | Sensitive | lineage4.4.1.1 | ca | SRR6397501 | RR-TB | lineage4.4.1.1 | ca | SRR6397621 | Sensitive | lineage4.4.1.1 | ca | SRR6397783 | Sensitive | lineage4.4.1.1 | ca | SRR29273717 | MDR-TB | lineage4.8 | None | SRR3724820 | Sensitive | lineage2.2.1 | None | SRR1791797 | Other | La1.7.1 | None | SRR1792110 | Other | La1.7.1 | None | ERR4799237 | Sensitive | lineage1.2.2.2 | in | ERR4799528 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4813203 | Pre-XDR-TB | lineage4 | None | SRR1791959 | Other | La1.7.1 | None | ERR1035282 | MDR-TB | lineage4.3.4.1 | br | ERR212113 | Sensitive | lineage1.1.2 | mw | ERR13267589 | Sensitive | lineage4.1.2.1 | None | SRR6479542 | Other | lineage1.2.2.2 | None | SRR7240536 | Other | La1.7.1 | None | SRR1791804 | Other | La1.7.1 | None | SRR1169547 | Sensitive | lineage1.1.2 | None | ERR12565482 | Sensitive | lineage4.3.2 | None | SRR28170742 | Sensitive | lineage4.3.3 | None | ERR2514838 | Other | lineage4.8 | gb | SRR21691025 | Sensitive | lineage1.2.2.2 | None | SRR21732658 | Sensitive | lineage1.2.2.2 | None | SRR21277049 | Sensitive | lineage4.5 | None | SRR2024912 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR10040453 | MDR-TB | lineage2.2.2 | None | ERR4820077 | Sensitive | lineage4.1.2.1 | None | SRR26112635 | Sensitive | lineage2.2.2 | None | ERR551380 | MDR-TB | lineage2.2.1 | None | SRR7240113 | Other | La1.7.1 | None | SRR6397702 | Sensitive | lineage4.4.1.1 | ca | ERR4828317 | Other | lineage2.2.1 | vn | SRR21746995 | MDR-TB | lineage2.1 | None | ERR2514636 | Sensitive | lineage1.1.2 | gb | SRR1791714 | Other | La1.7.1 | None | SRR1792111 | Other | La1.7.1 | None | ERR9125857 | Sensitive | lineage1.1.2 | None | SRR10808979 | Sensitive | lineage4.8 | None | SRR1710069 | Sensitive | lineage2.1 | cn | ERR2512699 | Sensitive | lineage1.1.2 | gb | SRR7240045 | Other | La1.7.1 | None | ERR9901075 | Sensitive | lineage4.3.2 | None | SRR1792101 | Other | La1.7.1 | None | SRR1792410 | Other | La1.7.1 | None | SRR22249929 | Sensitive | lineage4.1.1.3 | None | SRR1792171 | Other | La1.7.1 | None | SRR5341239 | Sensitive | lineage1.1.2 | in | ERR551381_ERR551380 | MDR-TB | lineage2.2.1 | None | SRR6785407 | Sensitive | lineage4.8 | None | SRR7240446 | Other | La1.7.1 | None | SRR960987 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR7240063 | Other | La1.7.1 | None | ERR688020 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR4797112 | Sensitive | lineage1.2.2.2 | in | SRR19324802 | Sensitive | lineage1.2.2.2 | None | SRR6397429 | RR-TB | lineage4.4.1.1 | ca | ERR4800699 | MDR-TB | lineage2.2.1 | None | SRR7069199 | Other | lineage4.8 | None | ERR718458 | Sensitive | lineage1.1.3 | th | ERR4553666 | MDR-TB | None | SRR25827427 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | None | SRR29385404 | RR-TB | lineage2.2.1 | None | SRR1792005 | Other | La1.7.1 | None | SRR1791824 | Other | La1.7.1 | None | ERR7902660 | Sensitive | lineage1.1.2 | None | ERR9124967 | RR-TB | lineage1.1.2 | None | SRR21658553 | Sensitive | lineage4.3.3 | None | SRR7236345 | Other | La1.7.1 | None | ERR2513740 | Sensitive | lineage4.2.2.2 | gb | SRR7240532 | Other | La1.7.1 | None | ERR4831266 | Sensitive | lineage4.1.2.1 | de | SRR29017134 | MDR-TB | lineage3 | None | ERR1199071 | HR-TB | lineage4.6.1.1 | ug | ERR7911174 | Pre-XDR-TB | lineage2.2.1 | vn | SRR6397587 | RR-TB | lineage4.4.1.1 | ca | SRR7240240 | Other | La1.7.1 | None | SRR6397334 | Sensitive | lineage4.4.1.1 | ca | SRR1183070 | Sensitive | lineage1.1.2 | None | SRR25827488 | MDR-TB | lineage1.2.2.2;lineage4.3.3 | None | SRR16058237 | Sensitive | lineage1.1.2 | None | SRR28868537 | Sensitive | lineage9 | None | ERR2516284 | Sensitive | lineage4.3.2 | be | ERR2516299 | Sensitive | lineage4.3.2 | be | SRR1792108 | Other | La1.7.1 | None | ERR12115320 | Other | lineage1.2.2.2 | None | SRR6797852 | Other | lineage1.2.2.2 | None | ERR11049959 | Sensitive | lineage1.1.2 | None | SRR6397582 | Sensitive | lineage4.4.1.1 | ca | SRR7240454 | Other | La1.7.1 | None | SRR5341460 | Other | lineage3 | None | SRR29273929 | MDR-TB | lineage4.8 | None | ERR551381 | MDR-TB | lineage2.2.1 | None | SAMEA2533899 | MDR-TB | lineage2.2.1 | uz | ERR245813 | Sensitive | lineage1.1.2 | mw | ERR9125624 | Other | lineage1.1.2 | None | SRR6397491 | RR-TB | lineage4.4.1.1 | ca | SRR1180171 | Sensitive | lineage1.1.2 | None | ERR9124986 | Sensitive | lineage4.4.1.1 | None | SRR21733101 | Sensitive | lineage1.2.2.2 | None | SRR29017100 | Pre-XDR-TB | lineage1.1.3.3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR1792409 | Other | La1.7.1 | None | ERR688042 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR26112334 | Other | lineage4.3.4.2 | None | SRR7240344 | Other | La1.7.1 | None | SRR30182343 | Sensitive | lineage3 | None | SRR7070255 | Sensitive | lineage4.2.2.2 | None | SRR6397642 | Other | lineage4.4.1.1 | None | ERR9125021 | Sensitive | lineage4.4.1.1 | None | ERR4799424 | Sensitive | lineage1.2.2.2 | in | SRR7240529 | Other | La1.7.1 | None | SRR16058455 | Sensitive | lineage4.4.1.1 | None | SRR3724980 | Sensitive | lineage2.2.1 | None | ERR4821353 | Sensitive | lineage1.2.2.2 | gb | SRR28045485 | MDR-TB | lineage1.2.2.1 | None | ERR551482 | Sensitive | lineage4.1.3 | de | SRR29273928 | Pre-XDR-TB | lineage4.8 | None | SRR7240349 | Other | La1.7.1 | None | SRR7240162 | Other | La1.7.1 | None | ERR752185 | HR-TB | lineage1.1.1 | th | SRR3085263 | MDR-TB | lineage2.2.1 | None | ERR1034610 | Pre-XDR-TB | lineage1.2.2.2 | pk | SRR29539061 | Sensitive | lineage4.2.1 | None | SRR29016878 | MDR-TB | lineage1.2.2.2 | None | SRR29231268 | HR-TB | lineage1.2.2.2 | None | ERR13291021 | MDR-TB | lineage2.2.2 | None | DRR184621 | Sensitive | lineage1.1.1.1 | None | ERR4828175 | Other | lineage2.2.1 | vn | SRR16058214 | RR-TB | lineage1.1.2 | None | SRR6397355 | Sensitive | lineage4.4.1.1 | ca | SRR29096695 | Sensitive | lineage1.1.2 | None | SRR29772718 | MDR-TB | lineage1.1.3.1 | None | SRR29051161 | Other | lineage2.2.1 | None | SRR29273907 | MDR-TB | lineage4.8 | None | SRR2024943 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR25340981 | Sensitive | lineage1.1.3 | None | ERR4024776 | Other | lineage4.1.1 | None | SRR6397788 | RR-TB | lineage4.4.1.1 | ca | ERR11067174 | Sensitive | lineage1.2.2.2 | None | SRR7069721 | Sensitive | lineage1.1.2 | None | ERR9899681 | Sensitive | lineage4.3.2 | None | SRR2024991 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR16370636 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397634 | Sensitive | lineage4.4.1.1 | ca | SRR16057970 | Sensitive | lineage4.4.1.1 | None | SRR16058448 | Other | lineage1.1.2 | None | SRR1792118 | Other | La1.7.1 | None | SRR1791722 | Other | La1.7.1 | None |
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