Rv0006 - c.-209T>C
Drug resistance types
148 Sensitive
1 RR-TB
154 HR-TB
15 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
88 Other
lineage Counts
| lineage | Count |
|---|---|
| 188 | |
| lineage4.9 | 64 |
| lineage4 | 89 |
| La1.8.1 | 3 |
| lineage4.6.2.2 | 4 |
| lineage4.1.2.1 | 7 |
| La1 | 2 |
| lineage2.2.1 | 13 |
| lineage3.1.2 | 1 |
| lineage4.5 | 1 |
| lineage2.2 | 3 |
| lineage4.3.4 | 2 |
| lineage1.1.3.1 | 1 |
| lineage5.2 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| La3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.1 | 3 |
| lineage4.1.1.3 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1 | 1 |
| lineage4.8 | 1 |
| lineage1.1.2 | 2 |
| lineage4.1.1.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 2 |
| lineage4.6.2 | 1 |
| lineage4.3.2.1 | 2 |
| lineage3 | 1 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage2.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 414 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3283047 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR3597003 | Sensitive | None | ERR363437 | Sensitive | lineage4 | None | ERR3597005 | Sensitive | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR3597001 | Sensitive | None | ERR363446 | Sensitive | lineage4 | None | ERR3597002 | Sensitive | None | ERR3597007 | Sensitive | None | ERR363445 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797068 | Other | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797043 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR387051 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4798431 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4769452 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR4811030 | Sensitive | None | ERR6358979 | Other | None | ERR4812155 | Sensitive | None | ERR6358837 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR7451301 | Sensitive | None | ERR7451300 | Sensitive | None | ERR736872 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | ERR987722 | HR-TB | None | ERR9125480 | Sensitive | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR16058668 | Sensitive | None | SRR14801749 | Sensitive | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1640750 | HR-TB | None | SRR22179528 | Sensitive | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR24061599 | Sensitive | None | SRR24061598 | Sensitive | None | SRR24061600 | Sensitive | None | SRR24061597 | Sensitive | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692825 | Other | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675502 | Other | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4815361 | Sensitive | None | SRR3675486 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675488 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675234 | Other | None | ERR4815471 | Other | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675222 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675265 | Other | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | ERR176643 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR176751 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR176740 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | ERR4816964 | Other | lineage4.9 | None | ERR4816019 | Sensitive | None | SRR3675542 | Other | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816151 | Other | lineage4.8 | None | ERR212123 | Other | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4817181 | Sensitive | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4818929 | HR-TB | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4820399 | HR-TB | lineage4.6.2 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341418 | Other | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341456 | Other | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819462 | Other | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | ERR1035138 | MDR-TB | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819927 | Sensitive | None | SRR5341298 | Sensitive | lineage4 | None | ERR2693231 | Other | None | SRR5341315 | Sensitive | None | ERR2514929 | HR-TB | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | ERR2517475 | Other | lineage4 | None | ERR4821046 | Sensitive | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR4821655 | Sensitive | lineage4 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | SRR5818605 | Sensitive | None | SRR5818567 | Sensitive | dj | SRR5818614 | Sensitive | dj | SRR5818652 | Sensitive | dj | SRR6046133 | HR-TB | None | SRR5818653 | Sensitive | dj | SRR5818668 | Sensitive | dj | SRR5818661 | Sensitive | dj | SRR6044925 | Sensitive | lineage4.9 | None | SRR5818685 | Sensitive | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR5818676 | Sensitive | dj | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045158 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6325442 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046897 | Sensitive | lineage4 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR4832052 | HR-TB | lineage2.1 | vn | ERR4831117 | HR-TB | None | ERR4831638 | Sensitive | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294266 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR502943 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR7496471 | Sensitive | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR8600288 | Other | La1.8.1 | None | ERR323041 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133986 | HR-TB | None |
|---|
