Rv0006 - c.-539G>C


Drug resistance types
48 Sensitive 2 RR-TB 69 HR-TB 17 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 100 Other
lineage Counts
lineage Count
lineage4.1.2 2
86
lineage4.7 2
lineage4.1.2.1 11
lineage4.1.1.3 1
lineage2.2.1 12
lineage4 29
lineage4.9 49
lineage4.3.4.1 1
La1 1
lineage4.1.3 2
lineage1.1.2 2
lineage2 3
lineage3 2
lineage4.8;La3 1
lineage4.5 3
lineage4.6.1.1 1
lineage1.1.3.1 1
lineage4.3.2 1
lineage4.1 3
lineage4.8 2
lineage4.6.2.2 1
lineage6.3.1 1
lineage4.4.1.1.1 1
lineage4.4.1.1 1
lineage4.3.3 4
lineage3.1 2
lineage2.1 2
lineage4.9;La3 1
lineage7;lineage2.2.1.2 1
lineage2.2.1;La3 1
lineage4.2;La1.7 1
lineage3;lineage2.2.1 1
lineage6.3;lineage2.2.1 1
lineage4.1.1 1
lineage1.2.1.1 1
lineage2.2 2
lineage4.1;lineage1 1
La1.8.1 1
lineage4.1.1.2 1
lineage4.2.2.2 1
lineage5.1.4 1
lineage4.2.1 2
spoligotype Counts
spoligotype Count
None 244
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR9970980 Other lineage4.1.2 None
SRR7496509 Other None
SRR7496523 Other lineage4.7 None
ERR502532 HR-TB None
ERR502943 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
SRR9970978 Sensitive lineage4.1.2 None
ERR11465025 Other lineage4.1.1.3 None
ERR323043 HR-TB None
SRR9971114 Other lineage2.2.1 None
ERR133825 Sensitive lineage4 None
ERR323107 Other lineage4 None
ERR1035157 Other lineage4.9 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR067699 HR-TB lineage4 None
ERR3797046 HR-TB None
ERR3283013 MDR-TB lineage4 None
ERR3283027 HR-TB None
ERR3283043 Other lineage4.9 None
ERR3283055 HR-TB None
ERR3445504 HR-TB None
ERR5336148 Other None
ERR3283010 Other La1 None
ERR3283036 HR-TB None
ERR3797069 Other None
ERR3797071 Other lineage4.9 None
ERR400336 Sensitive lineage4 None
ERR400320 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR3804155 Other lineage4.1.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4407463 HR-TB None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR400345 Other lineage4 None
ERR4596910 Sensitive lineage4 None
ERR4796929 Sensitive lineage4 None
ERR4797588 MDR-TB lineage3 None
ERR4797313 HR-TB None
ERR4797350 Sensitive lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4800341 Other lineage3 None
ERR12015083 Other lineage4.8;La3 None
ERR4811031 Sensitive lineage4.5 None
ERR4810741 HR-TB None
ERR4811022 HR-TB None
ERR6359069 Other lineage4.9 None
ERR4811105 HR-TB None
ERR4811142 MDR-TB None
ERR4812155 Sensitive None
ERR6358755 Other lineage4.6.1.1 None
ERR4811030 Sensitive None
ERR6359070 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR702406 HR-TB None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR736867 HR-TB None
ERR736874 HR-TB None
ERR752229 Other lineage4.5 None
ERR736837 Other lineage4.9 None
ERR9634265 Sensitive None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786440 Other lineage4.1 None
ERR9786569 Other lineage4.8 None
ERR9786604 Other None
ERR9786642 Other lineage4.1.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9787197 Other None
ERR9786671 Other None
ERR9786682 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9787139 Other lineage6.3.1 None
SRR10808805 Sensitive None
SRR10315551 Sensitive lineage2.2.1 None
SRR1172857 MDR-TB None
SRR1172728 MDR-TB None
SRR1172817 HR-TB None
SRR10809074 Sensitive lineage4 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1169194 Other None
SRR1172234 Other None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1173363 HR-TB None
SRR1172951 Other None
SRR1173118 Other None
SRR1173153 HR-TB None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173384 Other lineage4 None
SRR1173400 Other None
SRR1175090 Other lineage4.9 None
SRR1173633 HR-TB lineage4.9 None
SRR1173788 Other None
SRR1175074 MDR-TB None
SRR1173562 HR-TB lineage4 None
SRR1173629 Other None
SRR1173706 Other lineage4.9 None
SRR1173778 Other None
SRR1175049 RR-TB None
SRR1184312 HR-TB lineage2.2.1 None
SRR1175500 MDR-TB lineage4 None
SRR1175507 MDR-TB lineage4 None
SRR1175508 Other lineage4.9 None
SRR1175496 HR-TB lineage4.9 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1196546 HR-TB None
SRR1184372 MDR-TB None
SRR1184380 HR-TB None
SRR1184388 Other None
SRR1184381 MDR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1710057 Other lineage2.1 None
SRR1196566 HR-TB None
SRR1196677 HR-TB lineage2 None
SRR1196768 MDR-TB None
SRR12142339 HR-TB lineage2.2.1 None
SRR15368973 Other None
SRR16156775 Other lineage4.9 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR12142341 HR-TB None
SRR12416824 HR-TB None
SRR18003019 Other lineage2.2.1 None
SRR18213713 HR-TB lineage4.5 None
SRR26399973 Other lineage4.9;La3 None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR19304036 HR-TB None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR20969677 HR-TB lineage2 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR19303884 HR-TB None
SRR25827682 Other None
SRR12708416 Sensitive lineage4.1 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR3675465 HR-TB None
SRR23961559 Other lineage4.2;La1.7 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR3675472 Sensitive lineage4.9 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
ERR4815604 HR-TB None
SRR3675473 Sensitive lineage4.9 None
SRR3675477 Other lineage4.9 None
ERR176793 Other lineage4.1.1 None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675221 HR-TB None
SRR3416776 Other lineage2.1 None
SRR3675210 Sensitive lineage4.9 None
ERR4815471 Other lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR3275450 Other lineage4 None
SRR3675229 Other lineage4 None
SRR3675249 Sensitive lineage4.9 None
SRR3675236 HR-TB None
SRR3675247 Other lineage4.9 None
SRR3675279 Other None
SRR3675266 Sensitive lineage4.9 None
SRR3675312 HR-TB lineage4 None
SRR3675283 Sensitive lineage4.9 None
SRR3675311 Other None
SRR3675522 Other None
SRR3675318 Other lineage4.9 None
ERR4815752 Other lineage4.9 None
ERR4816964 Other lineage4.9 None
SRR3675387 Sensitive None
SRR3675455 Sensitive lineage4 None
SRR3675514 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR4816999 Other None
SRR3675542 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR3675547 Other lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
SRR3675572 Other None
SRR3675553 Sensitive lineage4.9 None
ERR4817060 RR-TB None
ERR4816656 HR-TB None
ERR4816585 Other lineage2.2 None
SRR3675577 Sensitive lineage4.9 None
SRR3742665 HR-TB None
ERR4817896 HR-TB lineage2.2.1 None
ERR4816734 Sensitive lineage4.9 None
ERR4815815 Sensitive lineage4 None
ERR4817735 Other lineage4.8 None
ERR4819068 Sensitive lineage4.1;lineage1 None
ERR234659 HR-TB None
SRR7496472 Other None
ERR4818021 Other La1.8.1 None
ERR4818252 Other lineage4.1.1.2 None
ERR2513470 Other lineage4.2.2.2 None
ERR2513283 Other lineage5.1.4 None
ERR4818929 HR-TB None
SRR5153091 HR-TB lineage4.3.3 None
ERR4818536 Other lineage4.9 None
ERR2512770 Other lineage4.2.1 None
ERR4819280 Sensitive lineage4 None
SRR5341396 Other lineage4 None
SRR5341456 Other None
SRR5341437 Sensitive lineage4.9 None
ERR4819357 Other lineage4.9 None
ERR4819462 Other lineage4 None
SRR5341302 HR-TB None
ERR4819781 Other lineage2.2.1 None
SRR5341296 Sensitive lineage4.9 None
ERR4819933 Other lineage4.9 None
ERR2446382 Other lineage4 None
ERR4819932 Other lineage4.7 None
SRR5341333 HR-TB None
SRR5341323 Sensitive lineage4 None
SRR5341345 Sensitive lineage4.9 None
SRR5341330 HR-TB None
ERR2693238 HR-TB lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
SRR6044835 Sensitive lineage4 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR2517475 Other lineage4 None
ERR4821655 Sensitive lineage4 None
SRR6045892 Sensitive None
SRR6044819 Sensitive lineage4.9 None
SRR6044790 HR-TB None
SRR6046245 Other lineage4.9 None
SRR6044855 Other lineage4.9 None
SRR6045205 Sensitive lineage4.9 None
SRR6045191 Sensitive lineage4.9 None
SRR6046066 HR-TB None
SRR6046385 Other lineage4.9 None
SRR6046305 Other lineage4.9 None
SRR6046299 HR-TB None
SRR6458423 HR-TB lineage2.2.1 None
SRR6046540 HR-TB None
SRR6046492 Other None
ERR4831638 Sensitive None
ERR4831546 HR-TB lineage2.2 None
SRR6785262 Sensitive lineage4.2.1 None
SRR6789624 MDR-TB lineage4.1 None
SRR6789626 Other None