Rv0006 - c.-539G>C
Drug resistance types
48 Sensitive
2 RR-TB
69 HR-TB
16 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 14 |
| 85 | |
| lineage2.1 | 2 |
| lineage4.9 | 49 |
| lineage4 | 29 |
| lineage1.2.1.1 | 1 |
| lineage2.2 | 2 |
| La1.8.1 | 1 |
| lineage4.8 | 2 |
| lineage4.1;lineage1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 2 |
| lineage4.3.3 | 4 |
| lineage4.7 | 2 |
| lineage4.1.2.1 | 11 |
| lineage4.1 | 3 |
| La1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.3 | 2 |
| lineage2 | 3 |
| lineage1.1.2 | 2 |
| lineage3 | 2 |
| lineage4.5 | 3 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage3.1 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 237 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR4815752 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675572 | Other | None | ERR4817060 | RR-TB | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816734 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR234659 | HR-TB | None | ERR4818929 | HR-TB | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4819357 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341456 | Other | None | SRR5341396 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5266542 | Pre-XDR-TB | lineage2.2.1 | ru | SRR5341330 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341302 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4821345 | Sensitive | lineage2.2.1 | gb | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046492 | Other | None | ERR4831638 | Sensitive | None | SRR6046540 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6789626 | Other | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502943 | HR-TB | None | ERR502532 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR3283010 | Other | La1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323043 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR5336148 | Other | None | ERR3445504 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400326 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR4407463 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797313 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4800341 | Other | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736874 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736867 | HR-TB | None | ERR9117709 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9634265 | Sensitive | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10808805 | Sensitive | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172951 | Other | None | SRR1172234 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173778 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969677 | HR-TB | lineage2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR4815604 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None |
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