Rv0006 - c.1842T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14032 Sensitive
297 RR-TB
2523 HR-TB
1974 MDR-TB
305 Pre-XDR-TB
82 XDR-TB
12263 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 7192 |
| lineage1.2.2.2 | 2739 |
| lineage1.1.3.1 | 1109 |
| La1.2 | 691 |
| lineage4.9 | 66 |
| lineage1.2.1.2.1 | 3632 |
| lineage1.1.1 | 1114 |
| lineage1.1.3.2 | 513 |
| lineage1.1.2 | 4585 |
| lineage1.1.1.1 | 1669 |
| La2 | 268 |
| lineage2.2.1 | 27 |
| lineage6.2.2 | 94 |
| La1.2.BCG | 676 |
| lineage9 | 37 |
| lineage1.2.2.1 | 452 |
| lineage1.1.3.3 | 249 |
| La1.4 | 131 |
| La1.8.2 | 257 |
| lineage1.2.1.1 | 205 |
| La1.7.1 | 1001 |
| lineage1.1 | 34 |
| lineage6.1.3 | 411 |
| lineage1.2.1.2 | 627 |
| lineage5.1.1 | 206 |
| La1.6 | 139 |
| lineage6.1.1 | 253 |
| lineage6.3.1 | 302 |
| lineage1.1.3.1;lineage4.7 | 2 |
| lineage1.1.1.1;lineage2.2.1 | 29 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage1.1.3.1;lineage1.2.2.2 | 3 |
| lineage1.2.2.2;lineage3 | 13 |
| lineage1.2.2.2;lineage4.1.1.3 | 2 |
| 119 | |
| lineage5.1.4 | 82 |
| lineage6 | 47 |
| lineage5.1 | 75 |
| lineage1.1.3 | 231 |
| lineage1.1.2;lineage4.1.2 | 1 |
| La3 | 268 |
| lineage5.1.3 | 42 |
| lineage6.1.2 | 120 |
| lineage1.1.3.2;lineage4.1.1.3 | 2 |
| lineage6.2.3 | 121 |
| lineage1.2.1 | 64 |
| lineage5.1.2 | 70 |
| La1.7.X-unk5 | 13 |
| lineage5.3 | 52 |
| La2;M.canetti | 1 |
| La1.7.X-unk4 | 84 |
| lineage1.2.2 | 26 |
| La1.7 | 32 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage1.2.2.2;lineage4.1;lineage4.3.3 | 1 |
| lineage7 | 80 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| M.canetti | 74 |
| lineage1.2.1.2.1;lineage4 | 3 |
| La1.3 | 140 |
| La1 | 8 |
| lineage1.2.2.1;lineage4 | 6 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.1.3 | 3 |
| lineage1.1.2;lineage1.1.3.3 | 7 |
| lineage6.2.1 | 33 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage5.1.5 | 23 |
| M.canetti;lineage2.1;lineage4.9 | 20 |
| lineage2.1;lineage4.9 | 17 |
| lineage1.2.2.2;lineage4 | 11 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage1.1.2;lineage4.1.2.1 | 4 |
| lineage1.1.2;lineage2.2.1 | 17 |
| lineage5.2 | 79 |
| lineage6.3.3 | 53 |
| lineage6.3.2 | 27 |
| lineage5 | 30 |
| lineage5.1.2;lineage6.3.1 | 1 |
| lineage1.2.1.2;lineage2.2.1 | 1 |
| lineage4.9;lineage6.3 | 8 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage1;lineage2.2.1;lineage3;lineage4 | 1 |
| La1.8.1;lineage4.9 | 2 |
| lineage1.1.2;lineage1.1.3.1 | 6 |
| lineage1.2.1.2.1;lineage2.2.1 | 8 |
| lineage1.1.2;lineage2.2.1.2 | 1 |
| lineage2.2.1.1;lineage6.1.2 | 1 |
| La1.2.BCG;lineage4.8 | 1 |
| lineage1.2.1.2.1;lineage4.4.2 | 1 |
| lineage1.1.2;lineage4.9 | 4 |
| La1.6;La3;lineage4.9 | 1 |
| La1.8.1;lineage4 | 4 |
| lineage4.7 | 1 |
| lineage1.1.1;lineage2.2.1 | 8 |
| lineage1.2.2.1;lineage4.9 | 1 |
| lineage4.2.2;lineage6.1.2 | 1 |
| lineage8 | 5 |
| lineage2.1;lineage6.3 | 2 |
| lineage1.1.2;lineage1.2.2.2 | 12 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage1.2.2.1;lineage4.1.2 | 4 |
| lineage1.2.1;lineage2.2.1;lineage4;lineage6.3 | 1 |
| lineage1.1.2;lineage4 | 15 |
| La1.1 | 9 |
| lineage1.1.3.3;lineage2.2.1 | 2 |
| lineage1.1.3.1;lineage3 | 3 |
| lineage4.6.3;lineage4.9 | 3 |
| M.canetti;lineage2.2 | 2 |
| La1.3;lineage1.2.2.2 | 14 |
| lineage1.2.2.1;lineage2.2.1 | 1 |
| lineage1.1.1.1;lineage6 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage1.1.1.1;lineage4.2.1 | 2 |
| La3;M.canetti | 9 |
| lineage4.1.3;lineage6.3.1 | 5 |
| lineage1.1.2;lineage4.3.4.1 | 1 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4 | 5 |
| lineage2.1 | 4 |
| lineage2.2 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage1.2.1.2.1;lineage4.3.4.1 | 1 |
| lineage4;lineage6.2.1 | 1 |
| lineage4;lineage6.3.1 | 4 |
| lineage4.1.2.1 | 8 |
| lineage1.1.1;lineage1.1.3.3 | 1 |
| lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage5.1.1;lineage5.1.2;lineage6.3.1 | 1 |
| lineage4.1.1.3;lineage5.1.2 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage1.1.3.2;lineage4.3.4.2.1 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage1.1.1.1;lineage4.2.2 | 1 |
| lineage6.1.3;lineage6.2.2 | 1 |
| lineage1.2.2.2;lineage4.3.2.1 | 3 |
| lineage1.1.2;lineage4.4 | 1 |
| La1.8.X-unk6 | 9 |
| lineage1.1.3.1;lineage4 | 4 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage6.1 | 3 |
| lineage1.1.2;lineage3.1.2 | 4 |
| lineage1.1.3.2;lineage4 | 7 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 3 |
| La1.2.BCG;lineage4.9 | 6 |
| La1.2.BCG;La1.8.2 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 24 |
| lineage1.1.2;lineage4.8 | 4 |
| lineage4.9;lineage7 | 4 |
| lineage1.1.1;lineage2.2.1.2 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.1.3;lineage6.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1.1.1;lineage4.4 | 1 |
| lineage1.1.1;lineage4.2.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage1.1.2;lineage3 | 16 |
| La3;lineage4.9 | 5 |
| lineage1.2.2.1;lineage4.3.4.2.1 | 3 |
| lineage1.2.2.1;lineage4.8.1 | 1 |
| lineage4.1.2.1;lineage6.2.3 | 1 |
| lineage4.1;lineage6.1.3 | 1 |
| lineage1.1.2;lineage4.3.4.2.1 | 2 |
| lineage4.3.3 | 2 |
| lineage1.1.3.1;lineage4.3.4.2 | 1 |
| lineage1.1.3;lineage1.2.2.2 | 1 |
| La1.3;lineage1.2.1.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1.1 | 9 |
| lineage1.1.1;lineage2.2 | 1 |
| La1;lineage4.9 | 1 |
| La1;lineage1.1.2 | 2 |
| La3;lineage2.2.1 | 3 |
| lineage1.1.3.2;lineage4.1.2 | 1 |
| lineage1.1.2;lineage3.1.1 | 8 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.2.1;lineage6.1.3 | 1 |
| lineage5.1.5;lineage6.1.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage1.1.3.1;lineage3.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4 | 2 |
| lineage1.1.2;lineage4.9.1 | 1 |
| lineage1.1.2;lineage4.3.2.1 | 2 |
| La1.5 | 8 |
| lineage6.2 | 2 |
| lineage1.1.2;lineage2 | 2 |
| lineage1;lineage2.2.1;lineage4.9 | 2 |
| La1.2;lineage3 | 1 |
| lineage1.1.3.1;lineage2.2.1.2 | 1 |
| lineage1.1.1;lineage4 | 3 |
| lineage1 | 13 |
| La1.7;lineage4.9 | 3 |
| lineage4.8 | 4 |
| La1.2;lineage4.9 | 1 |
| lineage6.1.3;lineage6.2 | 2 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage3.1.1 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage3.1.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.3.4.1;lineage4.6.2.2;lineage6.1.2 | 1 |
| La1.1;lineage1.2.2.2 | 1 |
| La1.2;La2 | 1 |
| lineage1.1.1.1;lineage2.2 | 2 |
| lineage4.1.3;lineage5.1.1 | 2 |
| lineage1.2.1.1;lineage4 | 2 |
| lineage1.1.1;lineage4.8 | 1 |
| lineage1.1.1;lineage1.2.1.2.1 | 1 |
| lineage6.1.1;lineage6.3.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.3.2;lineage1.2.2.2 | 4 |
| lineage1.2.2.2;lineage4.1.2 | 2 |
| lineage1.1.2;lineage1.1.3.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage1.1.1.1;lineage4 | 1 |
| La2;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 2 |
| lineage1.1.2;lineage4.1 | 3 |
| lineage4.8;lineage6.3.1 | 1 |
| lineage1.1.2;lineage1.1.3 | 1 |
| La1.6;lineage4.1 | 1 |
| lineage1.2.2.2;lineage4.8 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| lineage1.1.1.1;lineage4.8 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.6.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage6.1.1;lineage6.2 | 1 |
| lineage1.1.3.2;lineage3.1.1 | 3 |
| lineage6.1.3;lineage6.3.3 | 1 |
| La1.1;lineage3 | 1 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| lineage1.1.3.1;lineage2.2.1 | 4 |
| lineage6.1.1;lineage6.1.3 | 1 |
| lineage1.2.2.1;lineage4.9.1 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| lineage1;lineage2.2.1 | 1 |
| lineage1.1.1.1;lineage1.2.1.2.1 | 2 |
| lineage2.2.1;lineage6.1.3 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage1.2.2.2;lineage4.3.4.2.1 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4 | 2 |
| lineage4.1.2.1;lineage6.3.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1;lineage6.1.3 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage1.2.1.2.1;lineage1.2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.3.4.2;lineage6.1.3 | 1 |
| lineage1.1.2;lineage1.2.2.2;lineage4 | 1 |
| lineage1.1;lineage4.3.4.2.1 | 1 |
| lineage1.2.2.2;lineage4.3.3 | 3 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage3.1;lineage9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.2.1;lineage6.3.1 | 4 |
| lineage1.2.1.2;lineage4.5 | 1 |
| lineage4.8.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage1.1.3.1;lineage1.2.1.2.1 | 1 |
| La1.2;La1.7.1 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1.1.1;lineage1.1.3.1;lineage4.2.2;lineage5.1;lineage6 | 1 |
| lineage4.2.2.1;lineage5 | 2 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1.2;lineage4.3.3 | 1 |
| La1.2.BCG;lineage4 | 1 |
| La1.8;lineage1.2.2.2 | 1 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage5.1.1;lineage6.3.1 | 2 |
| lineage1.1.1.1;lineage4.4.2 | 2 |
| lineage1.2.1.2.1;lineage4.3.3 | 1 |
| lineage4.3.3;lineage6.2.2 | 1 |
| lineage1.1.1;lineage2.2.1.1 | 1 |
| La1.2;La1.8.2 | 1 |
| lineage1.1.1.1;lineage4.5 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage4.1.2.1;lineage6.1.1 | 2 |
| lineage4.6.2.2;lineage6.3.1 | 1 |
| lineage1.1;lineage4.1.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage1.2.2.2;lineage4.2 | 1 |
| lineage4.8;lineage5.1.1 | 3 |
| lineage1.1.1.1;lineage2.2.1;lineage4.4.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage4.1;lineage6.3.1 | 2 |
| lineage1.1.3.2;lineage4.3.4.2 | 1 |
| lineage1.2.1.2.1;lineage4.5 | 1 |
| lineage1.1.2;lineage4.1.1.3 | 3 |
| lineage4.7;lineage6.3.1 | 1 |
| lineage1.1.3;lineage4.3.3 | 1 |
| lineage4.6.2.2;lineage6.1.2 | 1 |
| lineage1.1.1.1;lineage4.1 | 1 |
| lineage1.1.2;lineage4.7 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage1.1.3.3;lineage4 | 3 |
| lineage1.2.1.2.1;lineage3 | 1 |
| lineage1.1.2;lineage4.3.4.2.1;lineage4.4 | 1 |
| lineage1.1.3.2;lineage3.1.1;lineage4 | 1 |
| lineage1.1.3.2;lineage4.1.2.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage3;lineage4 | 1 |
| lineage1.2.2.2;lineage4.1.1.1 | 2 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage4.3.4.1;lineage6.1.1 | 1 |
| lineage1.1.2;lineage2.2.1.1 | 2 |
| lineage1.2.2.2;lineage4.1.2.1 | 1 |
| lineage1.1.1.1;lineage1.1.2 | 1 |
| lineage1.1.3;lineage2.2.1 | 1 |
| lineage1.2.1.2.1;lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1 | 1 |
| lineage4;lineage6.1.3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4;lineage6.2.2 | 1 |
| lineage1.2.2.1;lineage4.1.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.2.1;lineage5 | 1 |
| lineage1.2.2.2;lineage4.8.1 | 1 |
| lineage1.1.3.2;lineage2.2.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage1.2.1.2;lineage3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage1.2.2.2;lineage2.2 | 1 |
| lineage1.1.2;lineage4.2.2 | 1 |
| lineage4.1.2.1;lineage4.6.2.2;lineage6.3.1 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage1.1;lineage2.2.1 | 1 |
| lineage4.6.2.2;lineage6 | 1 |
| lineage5.1.1;lineage5.1.2 | 1 |
| lineage1.1.3;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage1.1.3.1;lineage4.3.3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage1.2.1.1;lineage4.1.1.1 | 1 |
| La1.7.1;La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage1.2.2.1;lineage4.3.4.2 | 1 |
| lineage1.1.1.1;lineage4.1.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage4.2.2 | 1 |
| lineage1.1;lineage1.2.2.2 | 1 |
| La1.6;lineage4 | 1 |
| lineage1.1;lineage3.1.1;lineage4;lineage5.1 | 1 |
| La1.2.BCG;lineage1.1.1 | 1 |
| La1.2.BCG;La1.8.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage1.1;lineage3.1.2 | 1 |
| lineage4.1.2.1;lineage5.3 | 1 |
| lineage1.1.3.2;lineage3.1.2 | 1 |
| La1.1;lineage1.2.1.2.1 | 1 |
| lineage1.1.3.1;lineage3;lineage4.4.2 | 1 |
| lineage1.1.2;lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 31476 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 31476 rows and could cause your browser to crash if rendered.
