Rv0006 - p.Ala90Val


Drug resistance types
0 Sensitive 27 Pre-MDR 0 MDR 290 Pre-XDR 321 XDR 40 Other
lineage Counts
lineage Count
lineage2.2.1.1 8
lineage2.2.2 56
lineage2.2.1 278
lineage4.8 14
lineage1.2.2.2 9
lineage4.3.3 85
lineage4.2.1 6
lineage4.1.1.3 21
lineage4 4
lineage4.1.3 1
lineage1.1.1.1 1
lineage2.1 1
lineage4.4.2 9
lineage3 51
lineage1.1.2 10
lineage3.1.2.1 1
lineage4.2.2 3
lineage4.7 5
lineage4.3.4.2.1 1
lineage4.4.1.1 5
lineage4.3.4.2 16
lineage4.1.2.1 18
lineage4.2.2.1 6
lineage3.1.2 7
lineage4.6.4 4
lineage4.9 11
lineage4.3.2 4
lineage4.5 17
lineage1.1.3.3 2
lineage4.6 1
lineage3.1.3 1
lineage4.2.2.2 3
lineage4.2.1.1 1
lineage4.1.1 3
lineage4.3.4.1 1
lineage4.4.1.1.1 1
lineage2.2.1.2 2
lineage1.1.1 3
lineage4.1 1
lineage5.1.5 2
lineage4.3.1 1
lineage4.1.2.1.1 3
lineage5.1.2 1
spoligotype Counts
spoligotype Count
0000000000000000000000000000000000111111111 267
NA 174
1111111100111111111111111111111100001111111 4
1111111111110111111111111111111100001111111 1
0000000000000000000000000000000000000000000 9
1111111111111111111111111111111111111111111 1
1111111111111111111111111111111000000001111 1
1111111111111111101111111111111100001111111 4
1111111111111111111100001111111100001110111 11
1111111111111111111111011111111100001111111 4
1111111111111111111100001000001100001110111 1
1111111111110111111100001111111100001111111 2
1111011111111111111111111111111100001100011 1
1111111111111111111111111000000100001111111 4
0111111111111111111100001111111000000111111 2
1111111111111111111111111110111100001110111 4
1111111111111111111100001111100000000110111 1
1111111111111111111111111111011100001111111 2
1111111111111111111100001111111100001111111 6
1111111100011111111100001111111100001111111 1
1111111111111111111101111111011100001111111 1
1001111111111111111111111111111100001111111 5
1111111111111111111011011111111100001111111 1
1111111111111111111100001111011100001111111 7
1111111111111111111111111111111100001111111 23
1110000000001111101111111111111100001111111 7
0000000000000000000000000000000000110000000 1
1110000000001111101111111111111100001110111 1
1111111100110111111111111111111100001111111 2
1101111100111111111111111111111000001111111 1
1111111111111111101111111111011100001111111 1
1110000111111111111111000000000000111111111 16
1100000111111111110111000000000000110011111 1
1001000111011001111111111111111100001111111 1
1011111111111111111111111111000100001111101 1
1011111111111111111111011111111100001111111 1
1011111111111111111111111111000100001111111 1
1001111111111111110101111111000010111111111 1
1011111111111111110111111111000100001111111 1
1110000110111111011111000000000000110001110 1
1001111110011111100000011101000010011111111 1
1111111111111111111000001001111100001110111 5
1001101111111111111111111111111100001101111 1
1001101111111111101111111111111100001111101 1
1110000111111111111111000000000000110011101 1
1110000111111111011111000000000000110111111 1
1111111111111111101111011111000010111111011 1
1111111110111111111111111111111100001111111 1
1011111110000110111111111111000100001111011 1
1110000111111111111111000000000000111101111 1
1011111111111111111111111101111100001111111 1
1110000111111111011111000000000000111111111 1
1001111111011111011111111111111100001111111 1
1110000110111111111111001111111110001111111 1
1110000111100010111111000000000000111111111 1
1001111110111111110101111111000010111111111 1
0001010010110100011100111111111100001111011 1
1100000111110111111111000000000000111111111 1
1001111111111110111110111111111100001111111 1
1111111111110111011111111111111100001111111 1
1100000001110111111011000000000000110011111 1
1110000000000000000000000000000000011111111 1
1110000111111101011111000000000000111111111 1
0000000000000000000000000000000000100000000 4
0000000000011111111111111111111100001111111 1
1111111001111111111111111111000100001111111 3
1111111111110111111111111111000100001110111 1
1111111111110000000001111111111100001111111 1
1110000111110011111111000000000000111111111 1
1111111111111111000001111110000100001111111 4
1110000111111111111111000000000000110001111 1
1111111111111000001111111111111100001111111 1
1110000000000111101111111011011100001111111 1
1110000000000111101111111111111100001111111 2
1101111111111111111100001111111100001111111 1
0111111100011111111100001111111100001111111 3
1111111111001111111100001111111100001111111 1
0000000000000000000000000100000000111111111 1
1110000000111111111111000000000000111111111 1
1001111111111111111111111111000010110001111 1
1110000111111111111110000000000000111111111 1
1111111111111111111111111111000010111110000 2
1111011111111111111111111111111100001111111 4
1110000111111111111111000000000000110000011 1
1001111111111111111100001111000010110001111 1
1110000111111111111111000000000000001111111 1
1111111111111100000000001111111100001111111 1
1110000000001111101110011111111100001111111 1
1111111111111111111111111111000010111110011 1
1111111111111111111111111111000010110000111 1
1111111111111111101111111111000010111110111 1
1110001111111111000001111111011100001111111 1
1111111100011111111111111111111100001111111 3
1111100000000000000000001111111100001111111 1
1111111111111111111111111111111100001110111 6
1110111001111111111111111111000100001111111 1
0000000000000000000000000000000000000001111 1
0000000000000000000000000000000000111111011 1
1111011111101111111111111111111100001111111 2
0000000000000000000000000000000000111110111 3
0000000000000000000000000000000000000111111 1
1111111111110111111111110000000100001111111 1
1111111000001111000000001000000111110001111 2
1111110010000000011100001111111100001111111 1
0000000000000000000000001000000100001111111 3
1011111111110111111111111111111100001111111 1
1111110000000000111100001111111111110001111 1
1110000111100111111111000000000000111111111 2
1111111111111111101111011111000010111111111 1
1111111111111111111111111111000010111110111 1
0000000000000000000000000000000000101111111 1
Geographic prevalence
Country level data for this variant is available for 659 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5527175 Pre-XDR lineage2.2.1.1 pg
SRR1710076 XDR lineage2.2.2 cn
SAMN02628508 XDR lineage2.2.1 ir
SAMN02628483 XDR lineage2.2.1 ir
SAMN02628503 XDR lineage4.8 ir
SAMN02628484 XDR lineage2.2.1 ir
SAMN02628527 XDR lineage2.2.1 ir
SAMN02628485 XDR lineage2.2.1 ir
SAMN02414931 Pre-XDR lineage1.2.2.2 se
SAMN02403621 XDR lineage4.3.3 za
SAMN02584616 XDR lineage4.2.1 md
SAMN02414975 XDR lineage2.2.1 se
SAMN02414869 Pre-XDR lineage2.2.1 se
SRR1175470 Pre-XDR lineage4.8 ro
SAMN02414992 XDR lineage4.3.3 se
SAMN02419640 XDR lineage2.2.1 by
SAMN02403631 XDR lineage2.2.2 za
SAMN02585981 XDR lineage4.3.3 za
SAMN02403569 XDR lineage4.3.3 za
SAMN02419590 XDR lineage2.2.1 by
SAMN02414989 Pre-XDR lineage2.2.1 se
SAMN02414982 XDR lineage2.2.2 se
SRR1166137 XDR lineage4.8 ro
SAMN02403568 XDR lineage4.3.3 za
SAMN02585992 XDR lineage4.1.1.3 za
SAMN02586073 XDR lineage4.3.3 za
SAMN02584613 XDR lineage4.2.1 md
SAMN02586076 XDR lineage4.3.3 za
SAMN02414991 XDR lineage4.3.3 se
SAMN02350426 XDR lineage4.3.3 za
SAMN02381027 Pre-XDR lineage2.2.1 ug
SAMN02398693 XDR lineage2.2.2 kr
SAMN02403509 XDR lineage4.8 za
SAMN02360617 XDR lineage2.2.2 kr
SAMN02360604 XDR lineage2.2.2 kr
SAMN02360626 XDR lineage2.2.2 kr
SAMN02360622 XDR lineage2.2.1 kr
SAMN02398696 XDR lineage2.2.2 kr
SAMN02350422 XDR lineage4.3.3 za
SAMN02350430 XDR lineage4.3.3 za
SAMN02350427 XDR lineage4.3.3 za
SAMN02350410 XDR lineage2.2.1 za
SAMN02403490 XDR lineage2.2.2 za
SAMN02398708 XDR lineage2.2.2 kr
SAMN02403474 XDR lineage2.2.2 za
SAMN02350425 XDR lineage4.3.3 za
SAMN02403467 XDR lineage4.3.3 za
SAMN02360613 XDR lineage2.2.2 kr
SAMN02360620 XDR lineage2.2.2 kr
SAMN02398712 XDR lineage2.2.2 kr
SAMN02360548 Pre-XDR lineage2.2.1 kr
SAMN02398704 XDR lineage2.2.2 kr
SAMN02360610 XDR lineage2.2.2 kr
SAMN02350415 XDR lineage4.3.3 za
SAMN01925619 XDR lineage4.3.3 za
SAMN02360621 Pre-XDR lineage2.2.1 kr
SAMN02360611 XDR lineage2.2.2 kr
SAMN02350417 XDR lineage4.3.3 za
SAMN02360552 XDR lineage2.2.2 kr
SAMN02360560 XDR lineage2.2.2 kr
SAMN02360567 Other lineage4 kr
SAMN02350413 XDR lineage4.3.3 za
SAMN02360596 XDR lineage2.2.2 kr
SAMN02360549 Pre-XDR lineage2.2.1 kr
SAMN02403510 Pre-XDR lineage4.1.1.3 za
SAMN02398699 Pre-XDR lineage2.2.2 kr
SAMN02231161 Pre-XDR lineage4.1.3 ml
SAMN02350431 XDR lineage4.3.3 za
ERR015616 Pre-XDR lineage2.2.1 ru
SRR2099982 XDR lineage2.2.2 N/A
SRR5073542 Other lineage1.1.1.1 vn
SRR5067454 Other lineage2.2.1 vn
SRR5073958 Other lineage2.2.1 vn
SRR5067601 Other lineage2.2.1 vn
SRR5067333 Other lineage2.2.1 vn
SRR5065269 Pre-MDR lineage2.2.1 vn
SRR5065681 Other lineage2.2.1 vn
SRR5067264 Other lineage2.2.1 vn
SRR5067458 Pre-XDR lineage2.1 vn
SRR5065581 Pre-MDR lineage2.2.1 vn
SRR5065517 Other lineage4.4.2 vn
ERR1873438 XDR lineage2.2.1 za
ERR1873519 XDR lineage2.2.2 za
ERR1873509 XDR lineage2.2.1 za
ERR1873457 XDR lineage2.2.1 za
ERR067760 XDR lineage2.2.1 ru
ERR1873484 XDR lineage2.2.1 za
ERR067720 XDR lineage2.2.1 ru
ERR234568 XDR lineage2.2.1 ru
ERR229916 XDR lineage2.2.1 ru
ERR1873562 XDR lineage2.2.1 za
ERR1873440 XDR lineage2.2.2 za
ERR234615 XDR lineage2.2.1 ru
ERR1873474 XDR lineage2.2.1 za
ERR1873455 Pre-XDR lineage2.2.1 za
ERR1873456 XDR lineage2.2.2 za
ERR1873523 XDR lineage2.2.2 za
ERR1873553 XDR lineage2.2.2 za
ERR1873451 XDR lineage2.2.1 za
ERR1873556 XDR lineage2.2.1 za
ERR1873470 XDR lineage2.2.1 za
ERR1873547 XDR lineage2.2.2 za
ERR1873447 XDR lineage2.2.1 za
ERR1873450 XDR lineage2.2.1 za
ERR1873559 Pre-XDR lineage2.2.1 za
ERR1873442 Pre-XDR lineage2.2.1 za
ERR1873541 XDR lineage2.2.2 za
ERR1873436 XDR lineage2.2.2 za
ERR1873546 Pre-XDR lineage4.1.1.3 za
ERR1873529 XDR lineage2.2.2 za
SRR5341414 Pre-XDR lineage3 in
SRR5341428 Pre-XDR lineage3 in
SRR5341342 Other lineage1.1.2 in
SRR5341360 XDR lineage3 in
SRR5341371 XDR lineage3 in
SRR5341281 Pre-MDR lineage1.2.2.2 in
SRR5341468 Pre-XDR lineage3.1.2.1 in
SRR5341419 Other lineage4.1.1.3 in
SRR5341441 XDR lineage3 in
SRR5341434 Pre-MDR lineage3 in
SRR5341372 Pre-MDR lineage4.2.2 in
SRR5341274 Pre-XDR lineage1.2.2.2 in
SRR5341364 Other lineage1.1.2 in
SRR5341405 Pre-XDR lineage3 in
SRR5341385 XDR lineage3 in
SRR5341446 Other lineage1.1.2 in
SRR5341358 Other lineage1.1.2 in
SRR5341359 Pre-XDR lineage1.1.2 in
ERR1034984 XDR lineage4.3.3 za
ERR1034986 XDR lineage2.2.2 za
ERR1035076 Pre-XDR lineage2.2.1 za
ERR1034995 XDR lineage2.2.2 za
ERR1035069 XDR lineage2.2.1 za
ERR1034999 XDR lineage4.7 za
ERR1035038 XDR lineage2.2.2 za
ERR1035066 Pre-XDR lineage4.7 za
ERR1035139 Pre-XDR lineage2.2.1 sa
ERR1035030 Pre-XDR lineage4.7 za
ERR1035098 XDR lineage2.2.1 vn
ERR1035034 Pre-XDR lineage4.3.4.2.1 za
ERR1035032 Pre-XDR lineage4.4.1.1 za
ERR1035107 Pre-XDR lineage2.2.1 vn
ERR552219 XDR lineage2.2.1 N/A
ERR1034784 XDR lineage4.3.4.2 pe
ERR1034787 XDR lineage2.2.1 pe
ERR1034810 Pre-XDR lineage4.8 pt
ERR1034789 XDR lineage4.1.2.1 pe
ERR1034605 XDR lineage3 pk
ERR1034669 Pre-XDR lineage4.2.2.1 bg
ERR1034586 XDR lineage3.1.2 pk
ERR1035358 Pre-XDR lineage4.3.4.2 br
ERR1034616 XDR lineage3 pk
ERR1035364 Pre-XDR lineage4.6.4 br
ERR1034603 XDR lineage4.1.1.3 pk
ERR1034600 Pre-XDR lineage3 pk
ERR1035348 XDR lineage4.6.4 br
ERR1034598 XDR lineage4.9 pk
ERR1034587 XDR lineage3 pk
ERR1035356 Pre-XDR lineage4.3.4.2 br
ERR1034617 XDR lineage3 pk
ERR1034582 XDR lineage3 pk
ERR1034602 XDR lineage3.1.2 pk
ERR1034658 Pre-XDR lineage3 bg
ERR1034581 XDR lineage3.1.2 pk
ERR1035332 Pre-XDR lineage4.3.4.2 br
ERR1034612 XDR lineage3 pk
ERR1034615 XDR lineage3 pk
ERR1035260 XDR lineage4.1.2.1 br
ERR1035271 Pre-XDR lineage4.3.4.2 br
ERR1035277 Pre-XDR lineage4.3.2 br
ERR1035306 Pre-XDR lineage4.3.3 br
ERR1035258 Pre-XDR lineage4.1.2.1 br
ERR1035274 Pre-XDR lineage4.6.4 br
ERR1035312 Pre-MDR lineage4.3.3 br
ERR688030 XDR lineage4.9 pk
ERR1035284 Pre-XDR lineage4.7 br
ERR1035325 Pre-XDR lineage4.6.4 br
SRR2024899 XDR lineage2.2.1 cn
SRR2024897 Pre-XDR lineage2.2.1 cn
ERR1193782 XDR lineage4.3.3 pt
ERR1193881 XDR lineage4.3.3 za
SRR2024949 XDR lineage4.4.2 cn
ERR2515988 Pre-XDR lineage4.3.3 za
ERR2515826 XDR lineage4.1.1.3 za
ERR2516066 XDR lineage2.2.2 za
SRR2024917 Pre-XDR lineage2.2.1 cn
SRR2024918 Pre-XDR lineage2.2.1 cn
ERR2516019 XDR lineage2.2.2 za
ERR2515768 XDR lineage2.2.2 za
ERR2516045 Pre-XDR lineage4.1.2.1 za
ERR2515864 XDR lineage2.2.2 za
ERR2515776 XDR lineage4.3.3 za
SRR2024926 XDR lineage2.2.1 cn
ERR2515794 XDR lineage4.1.1.3 za
ERR2515990 Pre-XDR lineage4.1.1.3 za
SRR2024994 Pre-XDR lineage2.2.1 cn
ERR2515971 Pre-XDR lineage4.7 za
SRR2024921 Pre-XDR lineage2.2.1 cn
ERR2515810 XDR lineage2.2.1 za
SRR2024941 Pre-XDR lineage2.2.1 cn
SRR2024954 Pre-XDR lineage2.2.1 cn
ERR2515754 XDR lineage4.3.3 za
ERR2515411 Pre-XDR lineage4.3.3 za
ERR2515227 XDR lineage2.2.2 za
ERR2515597 XDR lineage4.1.1.3 za
ERR2515591 XDR lineage2.2.1 za
ERR2515264 Pre-XDR lineage4.1.2.1 za
ERR2515486 Pre-XDR lineage4.4.1.1 za
ERR2515756 Pre-XDR lineage4.8 za
ERR2515573 Pre-XDR lineage4.4.1.1 za
ERR2515640 XDR lineage4.1.1.3 za
ERR2515473 XDR lineage2.2.2 za
ERR2515725 XDR lineage2.2.2 za
ERR2515425 XDR lineage4.1.1.3 za
ERR2515682 XDR lineage4.3.3 za
ERR2515310 Pre-XDR lineage4.4.1.1 za
ERR2515175 XDR lineage4.3.3 za
ERR2515304 Pre-XDR lineage2.2.1 za
ERR2515133 XDR lineage4.1.1.3 za
ERR2515479 XDR lineage4.1.1.3 za
ERR2515319 XDR lineage4.3.3 za
ERR2515376 Pre-XDR lineage2.2.1 za
ERR2515577 XDR lineage2.2.2 za
ERR2515658 XDR lineage2.2.2 za
ERR2041730 XDR lineage4.8 rs
ERR2510423 Pre-XDR lineage3 pk
ERR2510467 Pre-XDR lineage3 pk
ERR2510640 Pre-XDR lineage3 pk
ERR2510315 XDR lineage4.9 pk
ERR2510543 Pre-XDR lineage4.5 pk
ERR2041769 Pre-XDR lineage4.8 rs
ERR2510643 Pre-XDR lineage4.5 pk
ERR2510553 Pre-XDR lineage1.1.2 pk
ERR2510413 Pre-XDR lineage4.5 pk
ERR2510577 Pre-XDR lineage3 pk
ERR2510274 Pre-XDR lineage3 pk
ERR2510389 Pre-XDR lineage3 pk
ERR2510568 Pre-XDR lineage3 pk
ERR2510554 Pre-XDR lineage1.1.2 pk
ERR2510551 Pre-XDR lineage3 pk
ERR2041739 XDR lineage4.2.2.1 rs
ERR2510411 Pre-XDR lineage4.9 pk
ERR2510580 Pre-XDR lineage4.9 pk
ERR2510392 XDR lineage4.9 pk
ERR2510451 Pre-MDR lineage3 pk
ERR2041789 XDR lineage4.2.2.1 rs
ERR2510631 Pre-MDR lineage3 pk
ERR2510700 Pre-XDR lineage1.1.3.3 pk
ERR2041736 XDR lineage4.2.2.1 rs
ERR2510595 Pre-XDR lineage4.6 pk
ERR2510520 Pre-XDR lineage4.2.2 pk
ERR2041698 XDR lineage4.2.2.1 rs
ERR2510418 Pre-XDR lineage3 pk
ERR2510616 Pre-XDR lineage4.2.2 pk
ERR2041764 XDR lineage4.2.2.1 rs
ERR2510879 Pre-XDR lineage4.9 pk
ERR2510586 Pre-XDR lineage3 pk
ERR2510558 Pre-XDR lineage4.9 pk
ERR2510249 Pre-XDR lineage3.1.3 pk
ERR2510319 Other lineage3 pk
ERR2510557 Pre-XDR lineage1.1.2 pk
ERR2510578 Pre-XDR lineage3 pk
ERR2510535 Pre-MDR lineage2.2.1 pk
ERR2510265 Pre-XDR lineage2.2.1 pk
ERR2510281 Other lineage3 pk
ERR2510445 XDR lineage3 pk
ERR2510419 Pre-XDR lineage4.2.2.2 pk
ERR2510873 Pre-XDR lineage4.9 pk
ERR2510342 Pre-XDR lineage3 pk
ERR2510414 Pre-XDR lineage4.9 pk
ERR2510453 Pre-XDR lineage4.8 pk
ERR2510294 Pre-XDR lineage3 pk
ERR2510391 Pre-XDR lineage3 pk
ERR2510304 Pre-XDR lineage3.1.2 pk
ERR2510639 Pre-MDR lineage3 pk
ERR552296 XDR lineage4.1.1.3 sz
ERR2517122 Pre-XDR lineage2.2.1.1 gb
ERR2517013 Pre-XDR lineage2.2.1 gb
ERR2517035 Pre-XDR lineage2.2.1 gb
ERR2516955 Pre-XDR lineage4.3.3 gb
ERR2517070 XDR lineage2.2.1 gb
ERR2517022 XDR lineage2.2.2 gb
ERR2517036 Pre-XDR lineage2.2.1 gb
ERR2517040 Pre-XDR lineage4.3.3 gb
ERR2516825 Pre-XDR lineage2.2.1 gb
ERR2516868 Pre-XDR lineage4.2.2.2 gb
ERR2516798 XDR lineage2.2.1 gb
ERR2516757 Pre-XDR lineage4.2.2.2 gb
ERR2516995 XDR lineage4.2.1 gb
ERR2517008 XDR lineage4.8 gb
ERR2510847 XDR lineage4.2.1 it
ERR2516623 XDR lineage4.1.2.1 pe
ERR2510719 Pre-XDR lineage2.2.1 it
ERR2516591 XDR lineage4 pe
ERR2510882 XDR lineage4.2.1.1 it
ERR2510702 XDR lineage2.2.1 it
ERR2510798 Pre-XDR lineage2.2.1 it
ERR2510853 XDR lineage2.2.1 it
ERR2516666 XDR lineage2.2.1 pe
ERR2510703 XDR lineage2.2.1 it
ERR2516534 XDR lineage4 pe
ERR2516549 Pre-XDR lineage3 nl
ERR2516608 XDR lineage4.3.3 pe
ERR2510686 XDR lineage2.2.1 it
ERR2516736 Other lineage3 nl
ERR2516546 XDR lineage2.2.1 pe
ERR2516738 Pre-XDR lineage4.1.2.1 pe
ERR2516698 XDR lineage4.1.2.1 pe
ERR2516673 XDR lineage4.1.2.1 pe
ERR2510709 XDR lineage2.2.1 it
ERR2516525 XDR lineage4.1.1.3 pe
ERR2516630 Pre-XDR lineage4.3.4.2 pe
ERR2510723 XDR lineage2.2.1 it
ERR2516705 XDR lineage4.3.3 pe
ERR2510713 Pre-XDR lineage2.2.1 it
ERR2516595 XDR lineage4.3.3 pe
ERR2516618 Pre-XDR lineage4.1.2.1 pe
ERR2516693 XDR lineage4.1.1 pe
ERR2516719 XDR lineage2.2.1 nl
ERR2516734 Pre-XDR lineage4.3.4.2 pe
ERR2516598 Pre-XDR lineage4.1.1 pe
ERR2516699 Pre-XDR lineage4.3.4.1 pe
ERR2516704 Pre-XDR lineage4.3.2 pe
ERR2510710 XDR lineage2.2.1 it
ERR2510669 XDR lineage2.2.1 it
ERR2516646 XDR lineage4.3.3 pe
ERR2510690 XDR lineage2.2.1 it
ERR2510666 Pre-XDR lineage2.2.1 it
ERR2516352 XDR lineage2.2.1 be
ERR2516405 XDR lineage4.1.2.1 pe
ERR2516418 XDR lineage2.2.1 pe
ERR2516476 XDR lineage2.2.1 pe
ERR2516181 XDR lineage4.3.3 be
ERR2516404 Pre-XDR lineage4.3.2 pe
ERR2516409 Pre-XDR lineage4.3.2 pe
ERR2514646 Pre-XDR lineage2.2.1 gb
ERR2514487 Pre-XDR lineage4.3.4.2 gb
SRR6045824 Pre-XDR lineage2.2.1 gb
ERR2513950 Pre-XDR lineage2.2.1 gb
ERR2513850 Pre-XDR lineage2.2.1 gb
ERR2513880 XDR lineage2.2.1 gb
ERR2513615 Other lineage3 gb
ERR2513656 Pre-XDR lineage4.3.4.2 gb
ERR2513831 Pre-XDR lineage4.3.4.2 gb
ERR2513556 Other lineage3.1.2 gb
SRR6045482 Other lineage3 gb
ERR2512930 Pre-XDR lineage2.2.1 gb
ERR2513154 Other lineage2.2.1 gb
SRR6045245 Pre-XDR lineage2.2.1 gb
ERR2513165 XDR lineage2.2.1 gb
ERR2512851 XDR lineage2.2.2 gb
ERR2513104 Pre-XDR lineage2.2.1 gb
ERR2512975 Pre-XDR lineage4.3.4.2 gb
ERR2512841 Pre-MDR lineage2.2.1 gb
SRR6046243 Pre-XDR lineage2.2.1 gb
ERR2512664 Other lineage3 gb
ERR2512718 Pre-XDR lineage2.2.1 gb
SAMN02586017 XDR lineage4.3.3 za
SAMN01828243 XDR lineage4.3.3 za
SAMN02586040 Pre-XDR lineage4.3.3 za
SAMN02586065 XDR lineage4.3.3 za
SAMN02350414 XDR lineage4.3.3 za
SAMN02586090 XDR lineage4.3.3 za
SAMN02585957 Pre-XDR lineage4.3.3 za
SAMN02350486 Pre-XDR lineage4.3.3 za
SAMN02350478 Pre-XDR lineage1.2.2.2 za
SAMN02586054 Pre-XDR lineage4.4.1.1.1 za
SAMN02586077 Pre-XDR lineage1.2.2.2 za
SAMN02350433 XDR lineage4.3.3 za
SAMN02585969 Pre-XDR lineage4.3.3 za
SAMN02350411 XDR lineage4.3.3 za
SAMN02586079 XDR lineage4.3.3 za
SAMN02586068 XDR lineage4.3.3 za
SAMN02586087 XDR lineage4.3.3 za
SAMN02586041 XDR lineage4.3.3 za
SAMN01925634 XDR lineage4.3.3 za
SAMN02350416 XDR lineage4.3.3 za
SAMN02053773 XDR lineage4.3.3 za
SAMN02350412 XDR lineage4.3.3 za
SAMN02586081 XDR lineage4.3.3 za
SAMN02586066 XDR lineage4.3.3 za
SAMN02586080 XDR lineage4.3.3 za
SAMN02350485 Pre-XDR lineage4.3.3 za
SAMN02586104 XDR lineage4.3.3 za
SAMN02350421 XDR lineage4.3.3 za
SAMN01925663 XDR lineage4.3.3 za
SAMN02350429 XDR lineage4.3.3 za
SAMN02586069 XDR lineage4.3.3 za
SAMN02586084 XDR lineage4.3.3 za
SAMN02053760 XDR lineage4.3.3 za
SAMN02350424 XDR lineage4.1.1.3 za
SAMN02586018 XDR lineage4.3.3 za
SAMN02585960 Pre-XDR lineage4.3.3 za
SAMN02350482 Pre-XDR lineage1.2.2.2 za
SAMN02586070 XDR lineage4.3.3 za
SAMN02053766 XDR lineage4.3.3 za
SAMN02585972 Pre-XDR lineage4.1.2.1 za
SAMN02586027 XDR lineage4.1.1.3 za
SAMN02350483 Pre-XDR lineage4.1.1.3 za
ERR3335775 Pre-XDR lineage4.9 pk
SRR7898225 Other lineage2.2.1.2 in
SRR7898227 XDR lineage1.1.2 in
ERR2677441 Pre-XDR lineage2.2.1 de
ERR3335764 Pre-XDR lineage3 pk
ERR3335730 Pre-MDR lineage1.2.2.2 pk
ERR2677396 XDR lineage4.1.2.1 de
SRR7898219 XDR lineage3.1.2 in
ERR2677440 Pre-XDR lineage2.2.1 de
ERR2677405 Pre-XDR lineage2.2.1 de
ERR2677401 XDR lineage4.2.1 de
ERR3335746 Other lineage1.2.2.2 pk
ERR3335769 Pre-MDR lineage3 pk
ERR2677439 XDR lineage2.2.1 de
SRR8380866 Pre-XDR lineage1.1.2 in
ERR2851367 Other lineage4.8 lb
SRR8380890 Pre-XDR lineage3 in
ERR2677386 Pre-XDR lineage2.2.1 de
ERR2677461 Pre-XDR lineage4.3.3 de
ERR3335736 Pre-XDR lineage4.5 pk
ERR2677389 Pre-XDR lineage2.2.1 de
SRR7585399 Pre-XDR lineage2.2.1 in
SRR7585437 Pre-XDR lineage2.2.1 in
ERR3148215 XDR lineage4.1.1.3 mx
ERR3148170 Pre-XDR lineage4.3.4.2 mx
ERR3148197 Pre-XDR lineage4.1.1.3 mx
ERR751720 Other lineage2.2.1 th
ERR752199 Pre-XDR lineage2.2.1 th
ERR751650 Pre-XDR lineage2.2.1 th
SRR5837709 Pre-XDR lineage2.2.1 th
SRR5709933 Pre-XDR lineage2.2.1 th
SRR5709896 Pre-XDR lineage1.1.1 th
SRR5709843 Pre-XDR lineage2.2.1 th
SRR5709794 Pre-XDR lineage2.2.1 th
SRR5709826 Pre-XDR lineage2.2.1 th
SRR5710016 XDR lineage2.2.1.1 th
SRR5709892 Pre-MDR lineage2.2.1.1 th
SRR5710019 Pre-XDR lineage4.8 th
SRR5709758 Pre-XDR lineage1.1.1 th
SRR5709993 Pre-XDR lineage2.2.1 th
SRR5709839 Pre-XDR lineage2.2.1 th
SRR5710028 XDR lineage2.2.1 th
SRR5709919 Pre-XDR lineage2.2.1 th
SRR5709863 XDR lineage2.2.1 th
SRR5709756 Pre-XDR lineage2.2.1 th
SRR5709895 Pre-XDR lineage2.2.1 th
SRR5709902 Pre-MDR lineage2.2.1 th
SRR5709903 XDR lineage2.2.1 th
SRR5709867 Pre-XDR lineage2.2.1 th
SRR5709870 Pre-MDR lineage2.2.1 th
ERR1023297 Pre-XDR lineage2.2.1 N/A
ERR502895 XDR lineage2.2.1 N/A
SRR5709900 Pre-MDR lineage2.2.1 th
ERR779901 XDR lineage4.3.4.2 pe
ERR751560 Pre-XDR lineage4.3.4.2 pe
SRR5709755 Pre-XDR lineage1.1.1 th
SRR5709885 XDR lineage2.2.1 th
SRR5710024 Pre-XDR lineage2.2.1 th
SRR5709815 Pre-XDR lineage2.2.1 th
SRR5709909 Pre-XDR lineage2.2.1 th
ERR751619 Pre-XDR lineage4.3.3 pe
SRR1723426 XDR lineage2.2.2 cn
ERR751451 Pre-XDR lineage4.1.1 pe
SRR1723931 Pre-XDR lineage4.5 cn
SRR1723932 Pre-MDR lineage4.5 cn
ERR502899 XDR lineage2.2.1 N/A
ERR1023480 Pre-XDR lineage2.2.2 N/A
ERR751395 XDR lineage2.2.1 pe
ERR1023465 Pre-XDR lineage2.2.1 N/A
ERR502946 XDR lineage2.2.2 N/A
ERR751620 XDR lineage4 pe
ERR751591 Pre-XDR lineage4.3.3 pe
ERR502901 Pre-XDR lineage2.2.1 N/A
ERR751464 Pre-MDR lineage4.8 pe
SRR1723552 Pre-XDR lineage2.2.1 cn
SRR1723980 Pre-XDR lineage4.4.2 cn
SRR1723838 Pre-XDR lineage2.2.1 cn
SRR1723816 Pre-XDR lineage2.2.1 cn
ERR502928 XDR lineage2.2.1 N/A
ERR751603 XDR lineage2.2.1 pe
SRR1723441 Pre-MDR lineage2.2.1 cn
SRR1723578 Pre-XDR lineage2.2.1 cn
SRR1723458 Pre-XDR lineage2.2.1 cn
SRR1723760 Pre-XDR lineage2.2.1 cn
SAMN03246565 Pre-XDR lineage2.2.1 cn
SRR1723846 Pre-XDR lineage2.2.1 cn
SRR1723619 Pre-MDR lineage2.2.1 cn
SAMN03246590 Pre-XDR lineage2.2.1 cn
SAMN03246352 Pre-XDR lineage2.2.1 cn
SRR1723701 XDR lineage2.2.1.1 cn
SRR1723455 Pre-XDR lineage2.2.1 cn
SRR1723911 Pre-MDR lineage4.5 cn
SRR1723751 Pre-XDR lineage2.2.1 cn
SRR1723431 XDR lineage2.2.2 cn
SRR1723847 Pre-XDR lineage2.2.1 cn
SRR1723691 Pre-XDR lineage2.2.1.1 cn
ERR133879 XDR lineage2.2.1 ru
ERR158587 XDR lineage2.2.1 ru
ERR137231 XDR lineage2.2.1 ru
ERR133937 XDR lineage4.1 ru
SRR3675285 Pre-XDR lineage2.2.1 gb
ERR2041944 XDR lineage2.2.1 N/A
ERR108453 XDR lineage2.2.1 ru
ERR067615 Pre-XDR lineage4.2.1 ru
ERR144567 XDR lineage2.2.1 ru
ERR234639 XDR lineage2.2.1 ru
ERR108480 XDR lineage4.1.2.1 ru
ERR144636 XDR lineage2.2.1 ru
ERR067674 XDR lineage2.2.1 ru
ERR067619 XDR lineage2.2.1 ru
ERR234598 XDR lineage2.2.1 ru
ERR229960 XDR lineage2.2.1 ru
ERR158588 XDR lineage2.2.1 ru
ERR234633 XDR lineage2.2.1 ru
ERR133890 XDR lineage2.2.1 ru
ERR108469 XDR lineage2.2.1 ru
ERR067744 XDR lineage2.2.1 ru
ERR234590 XDR lineage2.2.1 ru
ERR144600 XDR lineage2.2.1 ru
ERR229929 XDR lineage2.2.1 ru
ERR234560 XDR lineage2.2.1 ru
SAMN02419606 XDR lineage2.2.1 by
SAMN02419563 XDR lineage4.3.3 by
SAMN02419609 XDR lineage2.2.1 by
SRR6824481 Pre-XDR lineage2.2.1 cn
SAMN02419569 XDR lineage2.2.1 by
SAMN02419612 XDR lineage2.2.1 by
SAMN02419629 XDR lineage2.2.1 by
SRR6824667 Pre-XDR lineage4.4.2 cn
SAMN02419638 Pre-XDR lineage2.2.1 by
SAMN02419597 XDR lineage2.2.1 by
SAMN02419600 XDR lineage4.3.3 by
SAMN02419622 XDR lineage4.3.3 by
SAMN02419565 XDR lineage2.2.1 by
SAMN02419645 XDR lineage4.3.3 by
SAMN02419570 XDR lineage2.2.1 by
SAMN02419607 XDR lineage4.1.2.1 by
SAMN02419649 XDR lineage2.2.1 by
SAMN02419571 XDR lineage2.2.1 by
SAMN02419538 Pre-XDR lineage2.2.1 by
SRR6824615 Pre-XDR lineage2.2.1 cn
SAMN02419556 XDR lineage2.2.1 by
SAMN02419651 Pre-XDR lineage2.2.1 by
SAMN02419650 XDR lineage2.2.1 by
SRR6824541 Pre-XDR lineage4.5 cn
SAMN02419661 XDR lineage4.3.3 by
SAMN02419533 XDR lineage2.2.1 by
SRR6824594 XDR lineage2.2.2 cn
SAMN02419654 XDR lineage4.3.3 by
SAMN02419678 XDR lineage4.3.3 by
SAMN02419672 XDR lineage4.3.3 by
SRR6824482 Pre-XDR lineage2.2.2 cn
SAMN02419674 Pre-XDR lineage2.2.1 by
SAMN02419595 Pre-XDR lineage2.2.1 by
SAMN02419587 XDR lineage2.2.1 by
SRR6824407 Pre-XDR lineage2.2.1 cn
ERR1352342 XDR lineage2.2.1 cn
SRR6824471 Pre-XDR lineage2.2.1 cn
SRR6824410 Pre-XDR lineage2.2.1 cn
SRR6824608 Pre-XDR lineage2.2.1 cn
SRR6824584 Pre-XDR lineage2.2.2 cn
SRR6824467 Pre-XDR lineage2.2.1 cn
ERR1352357 XDR lineage2.2.1 cn
SRR7341649 XDR lineage4.4.1.1 ro
SRR6824337 Pre-XDR lineage4.5 cn
ERR1352356 XDR lineage2.2.1 cn
ERR1352341 XDR lineage2.2.1 cn
ERR1352354 XDR lineage2.2.1 cn
ERR1352344 XDR lineage2.2.1 cn
SRR6824466 Pre-MDR lineage4.5 cn
SRR6824529 Pre-XDR lineage2.2.1 cn
ERR1352358 XDR lineage2.2.1 cn
SRR6824540 Pre-XDR lineage2.2.1 cn
SRR6824464 Pre-XDR lineage2.2.1 cn
SRR6824530 Pre-XDR lineage2.2.1 cn
SRR6824669 Pre-XDR lineage2.2.1 cn
SRR6824474 Pre-XDR lineage2.2.1 cn
ERR1352350 XDR lineage2.2.1 cn
SRR6824527 Pre-XDR lineage2.2.1 cn
ERR1352355 XDR lineage2.2.1 cn
ERR1352353 XDR lineage2.2.1 cn
SRR6824470 Pre-XDR lineage2.2.1 cn
ERR1352343 XDR lineage2.2.1 cn
ERR1352351 XDR lineage2.2.1 cn
SRR6824370 XDR lineage2.2.1 cn
SRR6824379 Pre-MDR lineage2.2.1 cn
SRR6824291 Pre-MDR lineage2.2.1 cn
SRR6824670 Pre-XDR lineage2.2.1 cn
SRR6824517 Pre-XDR lineage2.2.1 cn
SRR6824389 Pre-XDR lineage2.2.1.1 cn
SRR6824580 Pre-XDR lineage2.2.1 cn
ERR1352352 XDR lineage2.2.1 cn
SRR6824563 Pre-XDR lineage2.2.1 cn
SRR6824651 XDR lineage2.2.1.1 cn
SRR6824613 XDR lineage2.2.2 cn
SRR6824675 Pre-XDR lineage2.2.1 cn
SRR671826 Pre-XDR lineage2.2.1 cn
SRR671829 Pre-XDR lineage2.2.1 cn
SRR671791 Pre-XDR lineage2.2.1 cn
SRR671740 XDR lineage4.4.2 cn
SRR671779 XDR lineage2.2.1 cn
SRR8237371 XDR lineage2.2.1 us
SRR671801 Pre-XDR lineage2.2.1 cn
SRR671781 XDR lineage2.2.1 cn
SRR5266538 XDR lineage4.3.3 ru
SRR6280196 Other lineage4.4.2 cn
SRR671769 Pre-XDR lineage4.5 cn
SRR671774 Pre-XDR lineage4.5 cn
SRR671796 Pre-XDR lineage2.2.1 cn
SRR6280209 Pre-XDR lineage2.2.1 cn
SRR671839 Pre-XDR lineage2.2.1 cn
SRR671852 Pre-XDR lineage2.2.1 cn
SRR671759 XDR lineage2.2.1 cn
SRR671750 Pre-XDR lineage4.5 cn
SRR671842 XDR lineage2.2.1 cn
SRR6153070 Other lineage4.1.1.3 ca
ERR502509 Pre-XDR lineage5.1.5 gh
ERR3014623 Pre-XDR lineage4.1.2.1 tn
ERR3014602 Pre-XDR lineage4.3.1 N/A
ERR3014605 Pre-XDR lineage4.1.2.1 tn
ERR502508 Pre-XDR lineage5.1.5 gh
ERR2864237 Pre-XDR lineage4.3.3 pt
ERR760598 XDR lineage4.1.2.1.1 ar
ERR760757 XDR lineage4.1.2.1.1 ar
ERR760823 XDR lineage4.1.2.1.1 ar
ERR3276264 Pre-XDR lineage4.3.4.2 nl
ERR3276266 Other lineage3 nl
ERR3275963 Other lineage3 nl
ERR3276030 Other lineage2.2.1 nl
ERR3276260 Pre-XDR lineage4.3.4.2 nl
SRR8651574 Pre-XDR lineage2.2.1 cn
SRR8651600 Pre-XDR lineage2.2.1 cn
ERR2179675 Pre-MDR lineage4.5 cn
SRR8651599 Pre-XDR lineage2.2.1 cn
SRR8651558 XDR lineage2.2.2 cn
SRR8651661 Pre-XDR lineage2.2.1 cn
ERR2179826 Other lineage4.5 cn
SRR8651658 Pre-XDR lineage2.2.1 cn
SRR8651645 Pre-XDR lineage2.2.1 cn
SRR8651637 Pre-XDR lineage4.4.2 cn
SRR8651649 Pre-XDR lineage2.2.1 cn
SRR8651607 Pre-XDR lineage2.2.1 cn
SRR8651660 Pre-XDR lineage4.4.2 cn
SRR8651646 Pre-XDR lineage2.2.1 cn
ERR2179679 Pre-XDR lineage4.5 cn
SRR8651612 Pre-XDR lineage2.2.1 cn
SRR8651556 Pre-XDR lineage2.2.1 cn
ERR2179642 Pre-MDR lineage4.5 cn
ERR2179680 Pre-XDR lineage4.4.2 cn
SRR8651559 Pre-XDR lineage2.2.1 cn
SRR8651598 Pre-XDR lineage2.2.1 cn
SRR8651638 Pre-XDR lineage2.2.1 cn
SRR8651582 Pre-XDR lineage2.2.1 cn
SRR8651594 XDR lineage2.2.1 cn
SRR8651596 Pre-XDR lineage2.2.1 cn
SRR8651602 Pre-XDR lineage2.2.1 cn
SRR8651663 Pre-XDR lineage2.2.1 cn
SRR8651615 Pre-XDR lineage2.2.2 cn
SRR8651589 Pre-XDR lineage2.2.1 cn
SRR2100279 Other lineage3 N/A
SRR2100250 XDR lineage2.2.2 N/A
SRR2100183 Other lineage5.1.2 N/A
SRR2100707 Other lineage3 N/A
SRR2100774 Other lineage3 N/A
SRR2100419 XDR lineage2.2.1 N/A
SAMEA2534248 XDR lineage2.2.1 uz
SAMEA2534455 XDR lineage2.2.1 uz
ERR552137 Other lineage1.1.3.3 N/A
SAMEA2533389 XDR lineage2.2.1 uz
DRR184947 Other lineage2.2.1 vn
DRR184878 XDR lineage2.2.1 vn
SRR5341266 Pre-XDR lineage3 in
ERR2432999 Pre-XDR lineage4.1.2.1 br
SRR5341237 Pre-XDR lineage2.2.1 in
SRR5341209 Pre-XDR lineage4.8 in
SRR5341244 Pre-XDR lineage1.2.2.2 in
SRR5341243 Pre-XDR lineage2.2.1 in
SRR5341245 Other lineage3.1.2 in
ERR3276261 Other lineage2.2.1.2 nl